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X-RAY DIFFRACTION
Materials and Methods page
3VFG
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 6.5
    Temperature 289.0
    Details Hamptom Index D7, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 289K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 116.03 α = 90
    b = 64.31 β = 93.65
    c = 57.24 γ = 90
     
    Space Group
    Space Group Name:    C 1 2 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type ADSC QUANTUM 315
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type APS BEAMLINE 24-ID-C
    Wavelength List 0.97949
    Site APS
    Beamline 24-ID-C
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 0.0
    Observed Criterion Sigma(I) 0.0
    Resolution(High) 1.65
    Resolution(Low) 30
    Number Reflections(All) 50590
    Number Reflections(Observed) 49781
    Percent Possible(Observed) 98.4
     
    High Resolution Shell Details
    Resolution(High) 1.65
    Resolution(Low) 1.71
    Percent Possible(All) 98.2
    R Merge I(Observed) 0.324
    Mean I Over Sigma(Observed) 3.0
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 1.65
    Resolution(Low) 28.58
    Number of Reflections(Observed) 47192
    Number of Reflections(R-Free) 2535
    Percent Reflections(Observed) 98.21
    R-Factor(Observed) 0.17842
    R-Work 0.17592
    R-Free 0.2247
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 24.259
    Anisotropic B[1][1] -0.5
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.49
    Anisotropic B[2][2] 0.75
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -0.28
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.65
    Shell Resolution(Low) 1.693
    Number of Reflections(R-Free) 184
    Number of Reflections(R-Work) 3441
    R-Factor(R-Work) 0.227
    R-Factor(R-Free) 0.289
    Percent Reflections(Observed) 97.39
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_gen_planes_other 0.001
    r_gen_planes_refined 0.01
    r_chiral_restr 0.136
    r_dihedral_angle_4_deg 19.159
    r_dihedral_angle_3_deg 14.757
    r_dihedral_angle_2_deg 34.637
    r_dihedral_angle_1_deg 7.409
    r_angle_other_deg 0.938
    r_angle_refined_deg 2.094
    r_bond_other_d 0.001
    r_bond_refined_d 0.02
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 3264
    Nucleic Acid Atoms 0
    Heterogen Atoms 0
    Solvent Atoms 532
     
     
  •   Software and Computing Hide
    Computing
    Data Collection HKL-2000
    Data Reduction (intensity integration) HKL-2000
    Data Reduction (data scaling) HKL-2000
    Structure Solution PHASER
    Structure Refinement REFMAC 5.7.0032
     
    Software
    refinement REFMAC version: 5.6.0117
    model building PHASER
    data collection HKL-2000