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X-RAY DIFFRACTION
Materials and Methods page
3VE7
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 4.5
    Temperature 293.0
    Details 2.0M ammonium sulfate, 0.1M sodium acetate , pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 293.0K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 41.4 α = 90
    b = 91.57 β = 98.79
    c = 50.95 γ = 90
     
    Space Group
    Space Group Name:    P 1 21 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type ADSC QUANTUM 315r
    Collection Date 2010-08-06
     
    Diffraction Radiation
    Monochromator MIRRORS
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type NSLS BEAMLINE X29A
    Wavelength List 1.075
    Site NSLS
    Beamline X29A
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 0.0
    Observed Criterion Sigma(I) 0.0
    Resolution(High) 1.54
    Resolution(Low) 44.12
    Number Reflections(All) 54843
    Number Reflections(Observed) 54843
    Percent Possible(Observed) 98.73
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method SAD
    reflnsShellList 1.539
    Resolution(Low) 44.124
    Cut-off Sigma(F) 0.0
    Number of Reflections(all) 54843
    Number of Reflections(Observed) 54843
    Number of Reflections(R-Free) 2783
    Percent Reflections(Observed) 98.73
    R-Factor(All) 0.1703
    R-Factor(Observed) 0.1703
    R-Work 0.1686
    R-Free 0.2009
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Anisotropic B[1][1] -3.3221
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 3.5561
    Anisotropic B[2][2] 6.2681
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -2.946
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.5387
    Shell Resolution(Low) 1.5653
    Number of Reflections(R-Free) 120
    Number of Reflections(R-Work) 2390
    R-Factor(R-Work) 0.2933
    R-Factor(R-Free) 0.3443
    Percent Reflections(Observed) 91.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.5653
    Shell Resolution(Low) 1.5937
    Number of Reflections(R-Free) 139
    Number of Reflections(R-Work) 2581
    R-Factor(R-Work) 0.2672
    R-Factor(R-Free) 0.3138
    Percent Reflections(Observed) 97.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.5937
    Shell Resolution(Low) 1.6244
    Number of Reflections(R-Free) 119
    Number of Reflections(R-Work) 2544
    R-Factor(R-Work) 0.2377
    R-Factor(R-Free) 0.3215
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.6244
    Shell Resolution(Low) 1.6576
    Number of Reflections(R-Free) 146
    Number of Reflections(R-Work) 2587
    R-Factor(R-Work) 0.2238
    R-Factor(R-Free) 0.2664
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.6576
    Shell Resolution(Low) 1.6936
    Number of Reflections(R-Free) 123
    Number of Reflections(R-Work) 2606
    R-Factor(R-Work) 0.1998
    R-Factor(R-Free) 0.2319
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.6936
    Shell Resolution(Low) 1.733
    Number of Reflections(R-Free) 144
    Number of Reflections(R-Work) 2603
    R-Factor(R-Work) 0.1918
    R-Factor(R-Free) 0.2342
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.733
    Shell Resolution(Low) 1.7763
    Number of Reflections(R-Free) 143
    Number of Reflections(R-Work) 2584
    R-Factor(R-Work) 0.1768
    R-Factor(R-Free) 0.2271
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.7763
    Shell Resolution(Low) 1.8244
    Number of Reflections(R-Free) 146
    Number of Reflections(R-Work) 2578
    R-Factor(R-Work) 0.1762
    R-Factor(R-Free) 0.2526
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.8244
    Shell Resolution(Low) 1.8781
    Number of Reflections(R-Free) 140
    Number of Reflections(R-Work) 2621
    R-Factor(R-Work) 0.1728
    R-Factor(R-Free) 0.2325
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.8781
    Shell Resolution(Low) 1.9387
    Number of Reflections(R-Free) 141
    Number of Reflections(R-Work) 2577
    R-Factor(R-Work) 0.1674
    R-Factor(R-Free) 0.2042
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.9387
    Shell Resolution(Low) 2.008
    Number of Reflections(R-Free) 141
    Number of Reflections(R-Work) 2635
    R-Factor(R-Work) 0.1649
    R-Factor(R-Free) 0.2079
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.008
    Shell Resolution(Low) 2.0884
    Number of Reflections(R-Free) 136
    Number of Reflections(R-Work) 2632
    R-Factor(R-Work) 0.1659
    R-Factor(R-Free) 0.208
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.0884
    Shell Resolution(Low) 2.1834
    Number of Reflections(R-Free) 136
    Number of Reflections(R-Work) 2648
    R-Factor(R-Work) 0.1648
    R-Factor(R-Free) 0.2168
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.1834
    Shell Resolution(Low) 2.2985
    Number of Reflections(R-Free) 154
    Number of Reflections(R-Work) 2604
    R-Factor(R-Work) 0.1707
    R-Factor(R-Free) 0.1974
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.2985
    Shell Resolution(Low) 2.4425
    Number of Reflections(R-Free) 130
    Number of Reflections(R-Work) 2653
    R-Factor(R-Work) 0.1599
    R-Factor(R-Free) 0.2032
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.4425
    Shell Resolution(Low) 2.6311
    Number of Reflections(R-Free) 141
    Number of Reflections(R-Work) 2632
    R-Factor(R-Work) 0.1663
    R-Factor(R-Free) 0.1671
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.6311
    Shell Resolution(Low) 2.8958
    Number of Reflections(R-Free) 152
    Number of Reflections(R-Work) 2623
    R-Factor(R-Work) 0.1685
    R-Factor(R-Free) 0.2187
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.8958
    Shell Resolution(Low) 3.3147
    Number of Reflections(R-Free) 127
    Number of Reflections(R-Work) 2654
    R-Factor(R-Work) 0.1678
    R-Factor(R-Free) 0.1799
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.3147
    Shell Resolution(Low) 4.1757
    Number of Reflections(R-Free) 147
    Number of Reflections(R-Work) 2666
    R-Factor(R-Work) 0.1414
    R-Factor(R-Free) 0.1742
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.1757
    Shell Resolution(Low) 44.1421
    Number of Reflections(R-Free) 158
    Number of Reflections(R-Work) 2642
    R-Factor(R-Work) 0.1541
    R-Factor(R-Free) 0.1686
    Percent Reflections(Observed) 99.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_plane_restr 0.005
    f_chiral_restr 0.068
    f_dihedral_angle_d 11.704
    f_angle_d 0.989
    f_bond_d 0.005
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 3160
    Nucleic Acid Atoms 0
    Heterogen Atoms 71
    Solvent Atoms 320
     
     
  •   Software and Computing Hide
    Computing
    Data Collection CBASS
    Data Reduction (intensity integration) HKL-2000
    Data Reduction (data scaling) SCALEPACK
    Structure Solution PHENIX
    Structure Refinement PHENIX (phenix.refine: 1.7.1_743)
     
    Software
    refinement PHENIX version: (phenix.refine: 1.7.1_743)
    model building PHENIX
    data collection CBASS