X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
pH 8.5
Temperature 293.0
Details 25% PEG 3350, 0.1M Tris, 0.2M magnesium chloride, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 293.0K

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 154.35 α = 90
b = 65.99 β = 93.56
c = 75.64 γ = 90
Symmetry
Space Group C 1 2 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC QUANTUM 315r -- 2010-10-29
Diffraction Radiation
Monochromator Protocol
MIRRORS SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON NSLS BEAMLINE X29A 1.075 NSLS X29A

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.64 40.53 90.93 -- -- -- -- 84573 84573 0.0 0.0 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.64 40.525 -- 0.0 84573 84573 4220 90.93 0.1812 0.1812 0.1793 0.2164 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.6397 1.6583 -- 36 754 0.3879 0.3775 -- 26.0
X Ray Diffraction 1.6583 1.6778 -- 54 1236 0.3626 0.3534 -- 42.0
X Ray Diffraction 1.6778 1.6983 -- 81 1512 0.3259 0.373 -- 52.0
X Ray Diffraction 1.6983 1.7198 -- 91 1902 0.3178 0.4158 -- 64.0
X Ray Diffraction 1.7198 1.7424 -- 118 2157 0.3051 0.3408 -- 74.0
X Ray Diffraction 1.7424 1.7663 -- 140 2462 0.2906 0.2904 -- 85.0
X Ray Diffraction 1.7663 1.7915 -- 140 2716 0.2873 0.3109 -- 92.0
X Ray Diffraction 1.7915 1.8182 -- 140 2835 0.2766 0.2813 -- 97.0
X Ray Diffraction 1.8182 1.8467 -- 148 2874 0.2548 0.309 -- 98.0
X Ray Diffraction 1.8467 1.8769 -- 155 2927 0.2307 0.3275 -- 99.0
X Ray Diffraction 1.8769 1.9093 -- 140 2902 0.2213 0.2615 -- 99.0
X Ray Diffraction 1.9093 1.944 -- 147 2938 0.2085 0.272 -- 99.0
X Ray Diffraction 1.944 1.9814 -- 134 2946 0.1996 0.2538 -- 100.0
X Ray Diffraction 1.9814 2.0219 -- 170 2895 0.1906 0.2346 -- 100.0
X Ray Diffraction 2.0219 2.0658 -- 150 2949 0.1873 0.2543 -- 100.0
X Ray Diffraction 2.0658 2.1139 -- 160 2944 0.1724 0.2355 -- 100.0
X Ray Diffraction 2.1139 2.1667 -- 183 2901 0.1705 0.2222 -- 100.0
X Ray Diffraction 2.1667 2.2253 -- 151 2950 0.1601 0.1948 -- 100.0
X Ray Diffraction 2.2253 2.2908 -- 147 2956 0.1651 0.2333 -- 100.0
X Ray Diffraction 2.2908 2.3647 -- 149 2954 0.1624 0.1907 -- 100.0
X Ray Diffraction 2.3647 2.4492 -- 149 2944 0.1799 0.214 -- 100.0
X Ray Diffraction 2.4492 2.5473 -- 155 2933 0.1756 0.2309 -- 100.0
X Ray Diffraction 2.5473 2.6632 -- 165 2923 0.1782 0.2473 -- 100.0
X Ray Diffraction 2.6632 2.8036 -- 175 2958 0.1844 0.2063 -- 100.0
X Ray Diffraction 2.8036 2.9792 -- 159 2948 0.1885 0.2431 -- 100.0
X Ray Diffraction 2.9792 3.2091 -- 163 2939 0.1868 0.207 -- 100.0
X Ray Diffraction 3.2091 3.5319 -- 169 2961 0.1752 0.2101 -- 100.0
X Ray Diffraction 3.5319 4.0425 -- 152 2971 0.149 0.1823 -- 100.0
X Ray Diffraction 4.0425 5.0916 -- 136 3010 0.1379 0.1671 -- 100.0
X Ray Diffraction 5.0916 40.537 -- 163 3056 0.1592 0.1677 -- 100.0
Temperature Factor Modeling
Temperature Factor Value
Anisotropic B[1][1] -0.4137
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] -4.7336
Anisotropic B[2][2] -1.2534
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] 1.6671
RMS Deviations
Key Refinement Restraint Deviation
f_plane_restr 0.004
f_chiral_restr 0.075
f_dihedral_angle_d 13.019
f_angle_d 1.07
f_bond_d 0.007
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 6072
Nucleic Acid Atoms 0
Heterogen Atoms 11
Solvent Atoms 550

Software

Computing
Computing Package Purpose
CBASS Data Collection
HKL-2000 Data Reduction (intensity integration)
HKL-2000 Data Reduction (data scaling)
BALBES Structure Solution
PHENIX (phenix.refine: 1.7.1_743) Structure Refinement
Software
Software Name Purpose
PHENIX version: (phenix.refine: 1.7.1_743) refinement
BALBES model building
CBASS data collection