POP-OUT | CLOSE
 
X-RAY DIFFRACTION
Materials and Methods page
3V9Q
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 5
    Temperature 277.0
    Details 120mM ammonium citrate pH 5.0, 20% (m/V) PEG 6000, VAPOR DIFFUSION, HANGING DROP, temperature 277K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 47.16 α = 90
    b = 66.49 β = 92.25
    c = 49.36 γ = 90
     
    Space Group
    Space Group Name:    P 1 21 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type OXFORD ONYX CCD
    Collection Date 2011-05-26
     
    Diffraction Radiation
    Monochromator multilayer optics
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SEALED TUBE
    Type OXFORD DIFFRACTION ENHANCE ULTRA
    Wavelength List 1.5418
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 2.0
    Observed Criterion Sigma(I) 2.0
    Resolution(High) 2
    Resolution(Low) 24.66
    Number Reflections(All) 20725
    Number Reflections(Observed) 20725
    Percent Possible(Observed) 99.9
    R Merge I(Observed) 0.102
    Redundancy 3.2
     
    High Resolution Shell Details
    Resolution(High) 2.0
    Resolution(Low) 2.11
    Percent Possible(All) 100.0
    R Merge I(Observed) 0.269
    Mean I Over Sigma(Observed) 3.4
    Redundancy 2.5
    Number Unique Reflections(All) 3012
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.0
    Resolution(Low) 24.66
    Cut-off Sigma(F) 1.36
    Number of Reflections(all) 20705
    Number of Reflections(Observed) 20705
    Number of Reflections(R-Free) 1006
    Percent Reflections(Observed) 99.97
    R-Factor(All) 0.1547
    R-Factor(Observed) 0.1547
    R-Work 0.1526
    R-Free 0.1953
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Anisotropic B[1][1] -1.143
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] -2.0438
    Anisotropic B[2][2] -0.48
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 1.6229
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.0
    Shell Resolution(Low) 2.1054
    Number of Reflections(R-Free) 146
    Number of Reflections(R-Work) 2793
    R-Factor(R-Work) 0.1786
    R-Factor(R-Free) 0.2314
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.1054
    Shell Resolution(Low) 2.2372
    Number of Reflections(R-Free) 154
    Number of Reflections(R-Work) 2812
    R-Factor(R-Work) 0.164
    R-Factor(R-Free) 0.2519
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.2372
    Shell Resolution(Low) 2.4098
    Number of Reflections(R-Free) 139
    Number of Reflections(R-Work) 2786
    R-Factor(R-Work) 0.1657
    R-Factor(R-Free) 0.2148
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.4098
    Shell Resolution(Low) 2.6521
    Number of Reflections(R-Free) 140
    Number of Reflections(R-Work) 2801
    R-Factor(R-Work) 0.152
    R-Factor(R-Free) 0.2306
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.6521
    Shell Resolution(Low) 3.0353
    Number of Reflections(R-Free) 133
    Number of Reflections(R-Work) 2828
    R-Factor(R-Work) 0.1514
    R-Factor(R-Free) 0.1831
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.0353
    Shell Resolution(Low) 3.8218
    Number of Reflections(R-Free) 142
    Number of Reflections(R-Work) 2816
    R-Factor(R-Work) 0.1438
    R-Factor(R-Free) 0.1687
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.8218
    Shell Resolution(Low) 24.6615
    Number of Reflections(R-Free) 152
    Number of Reflections(R-Work) 2863
    R-Factor(R-Work) 0.1409
    R-Factor(R-Free) 0.1627
    Percent Reflections(Observed) 100.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_plane_restr 0.005
    f_chiral_restr 0.076
    f_dihedral_angle_d 11.713
    f_angle_d 1.197
    f_bond_d 0.007
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 2512
    Nucleic Acid Atoms 0
    Heterogen Atoms 69
    Solvent Atoms 373
     
     
  •   Software and Computing Hide
    Computing
    Data Collection CrysAlisPro
    Data Reduction (intensity integration) CrysAlisPro
    Data Reduction (data scaling) SCALA
    Structure Solution Molrep
    Structure Refinement PHENIX (phenix.refine: 1.7.2_869)
     
    Software
    refinement PHENIX version: (phenix.refine: 1.7.2_869)
    model building Molrep
    data collection CrysAlisPro