X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
pH 8.5
Temperature 290.0
Details 0.2M LITHIUM SULFATE MONOHYDRATE, 0.1M TRIS-HCL, 30% (W/V) PEG 4000, , pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 290K

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 82.38 α = 90
b = 82.38 β = 90
c = 28.9 γ = 120
Symmetry
Space Group P 31

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
AREA DETECTOR RIGAKU RAXIS IV++ -- 2005-01-05
Diffraction Radiation
Monochromator Protocol
mirrors SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
ROTATING ANODE RIGAKU FR-E SUPERBRIGHT 1.54 -- --

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.56 71.44 96.8 -- -- -- -- 28491 28491 0.0 0.0 --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.56 1.609 93.99 -- -- -- -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.563 22.455 -- 0.0 22881 22881 1142 73.67 0.195 0.1897 0.1877 0.2254 Random
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.5631 1.6343 -- 115 2261 0.3018 0.348 -- 61.0
X Ray Diffraction 1.6343 1.7204 -- 140 2646 0.2389 0.2844 -- 72.0
X Ray Diffraction 1.7204 1.8281 -- 139 2708 0.2095 0.3127 -- 73.0
X Ray Diffraction 1.8281 1.9692 -- 144 2746 0.1929 0.242 -- 75.0
X Ray Diffraction 1.9692 2.1672 -- 152 2797 0.1774 0.2371 -- 76.0
X Ray Diffraction 2.1672 2.4805 -- 158 2826 0.1723 0.2059 -- 77.0
X Ray Diffraction 2.4805 3.1238 -- 145 2845 0.1784 0.2205 -- 77.0
X Ray Diffraction 3.1238 22.4576 -- 149 2910 0.1751 0.186 -- 79.0
Temperature Factor Modeling
Temperature Factor Value
Anisotropic B[1][1] 0.0
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 0.0
Anisotropic B[2][2] 0.0
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] 0.0
RMS Deviations
Key Refinement Restraint Deviation
f_plane_restr 0.007
f_chiral_restr 0.075
f_dihedral_angle_d 13.332
f_angle_d 1.028
f_bond_d 0.009
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 1798
Nucleic Acid Atoms 0
Heterogen Atoms 47
Solvent Atoms 328

Software

Computing
Computing Package Purpose
CrystalClear Data Collection
CrystalClear Data Reduction (intensity integration)
SCALEPACK Data Reduction (data scaling)
molrep Structure Solution
PHENIX (phenix.refine: 1.6.3_473) Structure Refinement
Software
Software Name Purpose
PHENIX version: (phenix.refine: 1.6.3_473) refinement
molrep model building
CrystalClear data collection