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X-RAY DIFFRACTION
Materials and Methods page
3V9M
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 8.5
    Temperature 290.0
    Details 0.2M LITHIUM SULFATE MONOHYDRATE, 0.1M TRIS-HCL, 30% (W/V) PEG 4000, , pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 290K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 82.38 α = 90
    b = 82.38 β = 90
    c = 28.9 γ = 120
     
    Space Group
    Space Group Name:    P 31
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector AREA DETECTOR
    Type RIGAKU RAXIS IV++
    Collection Date 2005-01-05
     
    Diffraction Radiation
    Monochromator mirrors
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source ROTATING ANODE
    Type RIGAKU FR-E SUPERBRIGHT
    Wavelength List 1.54
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 0.0
    Observed Criterion Sigma(I) 0.0
    Resolution(High) 1.56
    Resolution(Low) 71.44
    Number Reflections(All) 28491
    Number Reflections(Observed) 28491
    Percent Possible(Observed) 96.8
     
    High Resolution Shell Details
    Resolution(High) 1.56
    Resolution(Low) 1.609
    Percent Possible(All) 93.99
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 1.563
    Resolution(Low) 22.455
    Cut-off Sigma(F) 0.0
    Number of Reflections(all) 22881
    Number of Reflections(Observed) 22881
    Number of Reflections(R-Free) 1142
    Percent Reflections(Observed) 73.67
    R-Factor(All) 0.195
    R-Factor(Observed) 0.1897
    R-Work 0.1877
    R-Free 0.2254
    R-Free Selection Details Random
     
    Temperature Factor Modeling
    Anisotropic B[1][1] 0.0
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] 0.0
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 0.0
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.5631
    Shell Resolution(Low) 1.6343
    Number of Reflections(R-Free) 115
    Number of Reflections(R-Work) 2261
    R-Factor(R-Work) 0.3018
    R-Factor(R-Free) 0.348
    Percent Reflections(Observed) 61.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.6343
    Shell Resolution(Low) 1.7204
    Number of Reflections(R-Free) 140
    Number of Reflections(R-Work) 2646
    R-Factor(R-Work) 0.2389
    R-Factor(R-Free) 0.2844
    Percent Reflections(Observed) 72.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.7204
    Shell Resolution(Low) 1.8281
    Number of Reflections(R-Free) 139
    Number of Reflections(R-Work) 2708
    R-Factor(R-Work) 0.2095
    R-Factor(R-Free) 0.3127
    Percent Reflections(Observed) 73.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.8281
    Shell Resolution(Low) 1.9692
    Number of Reflections(R-Free) 144
    Number of Reflections(R-Work) 2746
    R-Factor(R-Work) 0.1929
    R-Factor(R-Free) 0.242
    Percent Reflections(Observed) 75.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.9692
    Shell Resolution(Low) 2.1672
    Number of Reflections(R-Free) 152
    Number of Reflections(R-Work) 2797
    R-Factor(R-Work) 0.1774
    R-Factor(R-Free) 0.2371
    Percent Reflections(Observed) 76.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.1672
    Shell Resolution(Low) 2.4805
    Number of Reflections(R-Free) 158
    Number of Reflections(R-Work) 2826
    R-Factor(R-Work) 0.1723
    R-Factor(R-Free) 0.2059
    Percent Reflections(Observed) 77.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.4805
    Shell Resolution(Low) 3.1238
    Number of Reflections(R-Free) 145
    Number of Reflections(R-Work) 2845
    R-Factor(R-Work) 0.1784
    R-Factor(R-Free) 0.2205
    Percent Reflections(Observed) 77.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.1238
    Shell Resolution(Low) 22.4576
    Number of Reflections(R-Free) 149
    Number of Reflections(R-Work) 2910
    R-Factor(R-Work) 0.1751
    R-Factor(R-Free) 0.186
    Percent Reflections(Observed) 79.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_plane_restr 0.007
    f_chiral_restr 0.075
    f_dihedral_angle_d 13.332
    f_angle_d 1.028
    f_bond_d 0.009
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 1798
    Nucleic Acid Atoms 0
    Heterogen Atoms 47
    Solvent Atoms 328
     
     
  •   Software and Computing Hide
    Computing
    Data Collection CrystalClear
    Data Reduction (intensity integration) CrystalClear
    Data Reduction (data scaling) SCALEPACK
    Structure Solution molrep
    Structure Refinement PHENIX (phenix.refine: 1.6.3_473)
     
    Software
    refinement PHENIX version: (phenix.refine: 1.6.3_473)
    model building molrep
    data collection CrystalClear