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X-RAY DIFFRACTION
Materials and Methods page
3V5H
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 6.5
    Temperature 293.0
    Details 25 mM MES pH6.5, 12% PEG 8000, VAPOR DIFFUSION, HANGING DROP, temperature 293K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 62.8 α = 90
    b = 87.6 β = 89.96
    c = 79.77 γ = 90
     
    Space Group
    Space Group Name:    P 1 21 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type MARMOSAIC 225 mm CCD
    Collection Date 2011-11-16
     
    Diffraction Radiation
    Monochromator Graphite
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type APS BEAMLINE 22-BM
    Wavelength List 1.0
    Site APS
    Beamline 22-BM
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 0.0
    Observed Criterion Sigma(I) 0.0
    Resolution(High) 1.63
    Resolution(Low) 50
    Number Reflections(All) 107676
    Number Reflections(Observed) 106085
    Percent Possible(Observed) 98.5
    R Merge I(Observed) 0.049
    Redundancy 3.7
     
    High Resolution Shell Details
    Resolution(High) 1.63
    Resolution(Low) 1.66
    Percent Possible(All) 79.4
    R Merge I(Observed) 0.362
    Redundancy 3.1
    Number Unique Reflections(All) 4292
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 1.63
    Resolution(Low) 16.43
    Cut-off Sigma(F) 0.0
    Number of Reflections(all) 107454
    Number of Reflections(Observed) 105970
    Number of Reflections(R-Free) 5285
    Percent Reflections(Observed) 98.59
    R-Factor(All) 0.1853
    R-Factor(Observed) 0.1853
    R-Work 0.1838
    R-Free 0.2144
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 29.7528
    Anisotropic B[1][1] 1.3315
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 1.1245
    Anisotropic B[2][2] -4.0291
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 2.6977
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.63
    Shell Resolution(Low) 1.67
    Number of Reflections(R-Free) 305
    Number of Reflections(R-Work) 6521
    R-Factor(R-Work) 0.2163
    R-Factor(R-Free) 0.2626
    Percent Reflections(Observed) 98.59
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    t_other_torsion 15.23
    t_omega_torsion 4.11
    t_angle_deg 1.0
    t_bond_d 0.009
    t_ideal_dist_contact 0.0
    t_chiral_improper_torsion 0.0
    t_nbd 0.0
    t_it 0.0
    t_gen_planes 0.0
    t_trig_c_planes 0.0
    t_dihedral_angle_d 0.0
     
    Coordinate Error
    Luzzati ESD(Observed) 0.207
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 6318
    Nucleic Acid Atoms 0
    Heterogen Atoms 6
    Solvent Atoms 964
     
     
  •   Software and Computing Hide
    Computing
    Data Collection MAR345dtb
    Data Reduction (intensity integration) HKL
    Data Reduction (data scaling) SCALEPACK
    Structure Solution PHASER
    Structure Refinement BUSTER 2.10.0
     
    Software
    data extraction pdb_extract version: 3.10
    refinement BUSTER-TNT
    molecular replacement Phaser version: 2.3.0
    data reduction SCALEPACK