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X-RAY DIFFRACTION
Materials and Methods page
3V5D
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 6.5
    Temperature 293.0
    Details 25 mM MES pH 6.5, 12% PEG 8000, VAPOR DIFFUSION, HANGING DROP, temperature 293K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 63.23 α = 90
    b = 90.49 β = 90.06
    c = 79.97 γ = 90
     
    Space Group
    Space Group Name:    P 1 21 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type MARMOSAIC 225 mm CCD
    Collection Date 2010-10-10
     
    Diffraction Radiation
    Monochromator Graphite
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type APS BEAMLINE 22-BM
    Wavelength List 1.0
    Site APS
    Beamline 22-BM
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 0.0
    Observed Criterion Sigma(I) 0.0
    Resolution(High) 2
    Resolution(Low) 50
    Number Reflections(All) 61188
    Number Reflections(Observed) 60582
    Percent Possible(Observed) 0.99
    R Merge I(Observed) 0.12
    B(Isotropic) From Wilson Plot 23.29
    Redundancy 7.1
     
    High Resolution Shell Details
    Resolution(High) 2.0
    Resolution(Low) 2.1
    Percent Possible(All) 0.95
    R Merge I(Observed) 0.41
    Mean I Over Sigma(Observed) 4.3
    Redundancy 6.5
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.0
    Resolution(Low) 40.0
    Cut-off Sigma(F) 0.0
    Number of Reflections(all) 60856
    Number of Reflections(Observed) 60433
    Number of Reflections(R-Free) 3060
    Percent Reflections(Observed) 99.33
    R-Factor(All) 0.2341
    R-Factor(Observed) 0.2341
    R-Work 0.2325
    R-Free 0.2644
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 25.37
    Anisotropic B[1][1] 2.7662
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 2.5179
    Anisotropic B[2][2] -7.6135
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 4.8473
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.0
    Shell Resolution(Low) 2.05
    Number of Reflections(R-Free) 226
    Number of Reflections(R-Work) 4021
    R-Factor(R-Work) 0.2242
    R-Factor(R-Free) 0.2548
    Percent Reflections(Observed) 99.33
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    t_ideal_dist_contact 0.0
    t_chiral_improper_torsion 0.0
    t_other_torsion 17.7
    t_omega_torsion 2.83
    t_it 0.0
    t_gen_planes 0.0
    t_trig_c_planes 0.0
    t_dihedral_angle_d 2.83
    t_angle_deg 1.05
    t_bond_d 0.008
     
    Coordinate Error
    Luzzati ESD(Observed) 0.329
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 6318
    Nucleic Acid Atoms 0
    Heterogen Atoms 0
    Solvent Atoms 406
     
     
  •   Software and Computing Hide
    Computing
    Data Collection MAR345dtb
    Data Reduction (intensity integration) XDS
    Data Reduction (data scaling) SCALA
    Structure Solution Phaser
    Structure Refinement BUSTER 2.10.0
     
    Software
    refinement BUSTER version: 2.10.0
    model building Phaser
    data collection MAR345dtb