X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
pH 8.5
Details 25% PEG3350, 0.1M Tris, 0.2M sodium chloride, pH 8.5, VAPOR DIFFUSION, HANGING DROP

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 154.27 α = 90
b = 65.86 β = 94.17
c = 151.22 γ = 90
Symmetry
Space Group C 1 2 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC QUANTUM 315r -- 2011-12-02
Diffraction Radiation
Monochromator Protocol
MIRRORS SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON NSLS BEAMLINE X29A 1.075 NSLS X29A

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.53 40.47 87.59 -- -- -- -- 199609 199609 0.0 0.0 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.53 40.466 -- 0.0 199609 199609 10061 87.59 0.1866 0.1866 0.1851 0.2161 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.53 1.5474 -- 101 1747 0.2527 0.2846 -- 25.0
X Ray Diffraction 1.5474 1.5656 -- 127 2546 0.2515 0.296 -- 35.0
X Ray Diffraction 1.5656 1.5847 -- 197 3327 0.2427 0.288 -- 47.0
X Ray Diffraction 1.5847 1.6047 -- 202 4110 0.247 0.2975 -- 57.0
X Ray Diffraction 1.6047 1.6259 -- 244 4782 0.242 0.269 -- 67.0
X Ray Diffraction 1.6259 1.6481 -- 307 5577 0.2392 0.2677 -- 77.0
X Ray Diffraction 1.6481 1.6717 -- 326 6339 0.2314 0.2871 -- 89.0
X Ray Diffraction 1.6717 1.6966 -- 367 6712 0.2191 0.2568 -- 94.0
X Ray Diffraction 1.6966 1.7231 -- 379 6893 0.2198 0.295 -- 97.0
X Ray Diffraction 1.7231 1.7514 -- 366 7044 0.217 0.2475 -- 97.0
X Ray Diffraction 1.7514 1.7816 -- 389 7032 0.2155 0.2431 -- 98.0
X Ray Diffraction 1.7816 1.814 -- 362 7027 0.2051 0.2634 -- 98.0
X Ray Diffraction 1.814 1.8489 -- 412 6974 0.2083 0.2606 -- 98.0
X Ray Diffraction 1.8489 1.8866 -- 357 7028 0.2026 0.2448 -- 97.0
X Ray Diffraction 1.8866 1.9276 -- 367 7070 0.1983 0.25 -- 98.0
X Ray Diffraction 1.9276 1.9725 -- 388 6887 0.194 0.2324 -- 97.0
X Ray Diffraction 1.9725 2.0218 -- 376 7018 0.189 0.2128 -- 97.0
X Ray Diffraction 2.0218 2.0765 -- 357 6920 0.1927 0.2091 -- 96.0
X Ray Diffraction 2.0765 2.1376 -- 381 6963 0.1856 0.229 -- 96.0
X Ray Diffraction 2.1376 2.2066 -- 353 6942 0.1854 0.2127 -- 96.0
X Ray Diffraction 2.2066 2.2854 -- 378 6904 0.1813 0.2159 -- 96.0
X Ray Diffraction 2.2854 2.3769 -- 340 6917 0.1777 0.2254 -- 96.0
X Ray Diffraction 2.3769 2.4851 -- 351 6944 0.1772 0.2249 -- 96.0
X Ray Diffraction 2.4851 2.6161 -- 371 6991 0.1826 0.2016 -- 96.0
X Ray Diffraction 2.6161 2.7799 -- 379 6980 0.1868 0.2208 -- 97.0
X Ray Diffraction 2.7799 2.9945 -- 363 7079 0.1879 0.2134 -- 97.0
X Ray Diffraction 2.9945 3.2957 -- 369 7037 0.1853 0.2164 -- 97.0
X Ray Diffraction 3.2957 3.7723 -- 368 7063 0.1663 0.1882 -- 97.0
X Ray Diffraction 3.7723 4.7516 -- 414 7252 0.1495 0.1751 -- 100.0
X Ray Diffraction 4.7516 40.48 -- 370 7443 0.1843 0.1983 -- 99.0
Temperature Factor Modeling
Temperature Factor Value
Anisotropic B[1][1] -1.1305
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] -0.499
Anisotropic B[2][2] -0.0017
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] 1.1321
RMS Deviations
Key Refinement Restraint Deviation
f_angle_d 1.061
f_plane_restr 0.004
f_chiral_restr 0.072
f_bond_d 0.006
f_dihedral_angle_d 11.928
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 11998
Nucleic Acid Atoms 0
Heterogen Atoms 49
Solvent Atoms 1498

Software

Software
Software Name Purpose
CBASS data collection
BALBES phasing
PHENIX refinement version: (phenix.refine: 1.6.4_486)
HKL-2000 data reduction
SCALEPACK data scaling