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X-RAY DIFFRACTION
Materials and Methods page
3V53
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 5.65
    Temperature 281.0
    Details pH 5.65, VAPOR DIFFUSION, HANGING DROP, temperature 281K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 81.58 α = 90
    b = 86.17 β = 90
    c = 197.17 γ = 90
     
    Space Group
    Space Group Name:    C 2 2 21
     
     
  •   Diffraction Hide
    Diffraction Detector
    Collection Date 2010-06-02
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type SSRF BEAMLINE BL17U
    Wavelength List 0.9793
    Site SSRF
    Beamline BL17U
     
     
  •   Refinement Data Hide
    Reflection Details
    Resolution(High) 2.8
    Resolution(Low) 50
    Number Reflections(All) 15818
    Number Reflections(Observed) 15818
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method SAD
    reflnsShellList 2.9
    Resolution(Low) 49.29
    Number of Reflections(Observed) 14732
    Number of Reflections(R-Free) 765
    Percent Reflections(Observed) 97.98
    R-Factor(Observed) 0.26537
    R-Work 0.26376
    R-Free 0.29835
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 81.653
    Anisotropic B[1][1] -0.05
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] -0.04
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 0.09
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.9
    Shell Resolution(Low) 2.975
    Number of Reflections(R-Free) 55
    Number of Reflections(R-Work) 1062
    R-Factor(R-Work) 0.315
    R-Factor(R-Free) 0.322
    Percent Reflections(Observed) 96.13
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_scangle_it 0.962
    r_scbond_it 0.555
    r_mcangle_it 0.577
    r_mcbond_it 0.313
    r_gen_planes_refined 0.003
    r_chiral_restr 0.057
    r_dihedral_angle_4_deg 12.606
    r_dihedral_angle_3_deg 17.024
    r_dihedral_angle_2_deg 39.451
    r_dihedral_angle_1_deg 4.003
    r_angle_refined_deg 0.973
    r_bond_refined_d 0.007
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 4150
    Nucleic Acid Atoms 0
    Heterogen Atoms 0
    Solvent Atoms 0
     
     
  •   Software and Computing Hide
    Computing
    Data Collection HKL-2000
    Data Reduction (intensity integration) HKL-2000
    Data Reduction (data scaling) HKL-2000
    Structure Solution SOLVE
    Structure Refinement REFMAC 5.5.0102
     
    Software
    data extraction pdb_extract version: 3.10
    refinement REFMAC5