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X-RAY DIFFRACTION
Materials and Methods page
3V4S
  •   Crystallization Hide
    Crystallization Experiments
    pH 6.5
    Temperature 298.0
    Details 0.1M MES, 5mM DTT, 11% glycerol, 10% PEG6000, 10mM MgCl2, 17 mM NaHCO3, 17 mM ATP, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 57.74 α = 90
    b = 82.87 β = 90
    c = 167.93 γ = 90
     
    Space Group
    Space Group Name:    P 21 21 21
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type MARMOSAIC 300 mm CCD
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type APS BEAMLINE 22-ID
    Wavelength List 1.00
    Site APS
    Beamline 22-ID
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 0.0
    Observed Criterion Sigma(I) 0.0
    Resolution(High) 2.02
    Resolution(Low) 19.96
    Number Reflections(Observed) 51477
    Percent Possible(Observed) 96.11
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.02
    Resolution(Low) 19.96
    Number of Reflections(all) 48860
    Number of Reflections(Observed) 51477
    Number of Reflections(R-Free) 2617
    Percent Reflections(Observed) 96.1
    R-Factor(Observed) 0.174
    R-Work 0.172
    R-Free 0.215
     
    Temperature Factor Modeling
    Mean Isotropic B Value 31.31
    Anisotropic B[1][1] 0.0
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] 0.0
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 0.0
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.02
    Shell Resolution(Low) 2.07
    Number of Reflections(R-Free) 133
    Number of Reflections(R-Work) 1940
    R-Factor(R-Work) 0.208
    R-Factor(R-Free) 0.26
    Percent Reflections(Observed) 54.9
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_gen_planes_refined 0.005
    r_chiral_restr 0.081
    r_dihedral_angle_4_deg 7.549
    r_dihedral_angle_3_deg 13.576
    r_dihedral_angle_2_deg 40.992
    r_dihedral_angle_1_deg 5.52
    r_angle_refined_deg 1.264
    r_bond_refined_d 0.008
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 5930
    Nucleic Acid Atoms 0
    Heterogen Atoms 69
    Solvent Atoms 479
     
     
  •   Software and Computing Hide
    Computing
    Structure Solution PHASER
    Structure Refinement REFMAC 5.6.0117
     
    Software
    data extraction pdb_extract version: 3.10
    refinement REFMAC5
    molecular replacement Phaser