X-RAY DIFFRACTION Experimental Data & Validation


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Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
pH 8
Temperature 289.0
Details HEPES, PEG 3350, Propanol, pH 8, VAPOR DIFFUSION, HANGING DROP, temperature 289K

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 134.89 α = 90
b = 48.2 β = 110.55
c = 140.13 γ = 90
Symmetry
Space Group C 1 2 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
AREA DETECTOR RIGAKU RAXIS Osmic blue mirrors 2009-06-29
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SEALED TUBE RIGAKU MICROMAX-002 1.54 -- --

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.13 19.99 93.6 0.062 -- -- 3.18 -- n/a -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
2.7 2.8 85.0 0.22 -- 3.9 3.12 1999

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.13 19.985 -- 1.34 -- 44060 2257 92.35 -- 0.2402 0.2378 0.2843 --
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 41.725
Anisotropic B[1][1] 4.2044
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 0.4131
Anisotropic B[2][2] -4.4839
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] 0.2795
RMS Deviations
Key Refinement Restraint Deviation
f_angle_deg 0.733
f_bond_d 0.003
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 6519
Nucleic Acid Atoms 0
Heterogen Atoms 0
Solvent Atoms 503

Software

Computing
Computing Package Purpose
CrystalClear Data Collection
CrystalClear Data Reduction (intensity integration)
d*TREK Data Reduction (data scaling)
Phaser Structure Solution
PHENIX Structure Refinement
Software
Software Name Purpose
pdb_extract version: 3.10 data extraction
REFMAC5 refinement
D*trek version: 9.7 W8RSSI data reduction