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X-RAY DIFFRACTION
Materials and Methods page
3UYH
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 6.5
    Temperature 293.0
    Details 15% PEG400, 100 mM sodium chloride, 100 mM lithium chloride, 100 mM potassium bromide, 50 mM sodium cacodylate (pH 6.5)., VAPOR DIFFUSION, HANGING DROP, temperature 293K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 51.36 α = 90
    b = 51.36 β = 90
    c = 51.73 γ = 120
     
    Space Group
    Space Group Name:    P 31 2 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type ADSC QUANTUM 315r
    Collection Date 2011-12-05
     
    Diffraction Radiation
    Monochromator SI 111 CHANNEL
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type DIAMOND BEAMLINE I04
    Wavelength List 0.9795
    Site DIAMOND
    Beamline I04
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma(I) 2.0
    Resolution(High) 1.84
    Resolution(Low) 22.36
    Number Reflections(Observed) 7126
    Percent Possible(Observed) 99.6
    R Merge I(Observed) 0.06
    Redundancy 10.5
     
    High Resolution Shell Details
    Resolution(High) 1.84
    Resolution(Low) 1.88
    Percent Possible(All) 100.0
    R Merge I(Observed) 0.8
    Mean I Over Sigma(Observed) 2.9
    Redundancy 10.7
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 1.95
    Resolution(Low) 12.0
    Number of Reflections(all) 2807
    Number of Reflections(Observed) 5693
    Number of Reflections(R-Free) 271
    Percent Reflections(Observed) 98.74
    R-Factor(Observed) 0.23309
    R-Work 0.23123
    R-Free 0.27496
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 40.963
    Anisotropic B[1][1] -0.03
    Anisotropic B[1][2] -0.01
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] -0.03
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 0.04
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.95
    Shell Resolution(Low) 1.999
    Number of Reflections(R-Free) 23
    Number of Reflections(R-Work) 361
    R-Factor(R-Work) 0.423
    R-Factor(R-Free) 0.407
    Percent Reflections(Observed) 100.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_gen_planes_refined 0.013
    r_chiral_restr 0.079
    r_angle_refined_deg 2.008
    r_bond_refined_d 0.007
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 0
    Nucleic Acid Atoms 447
    Heterogen Atoms 63
    Solvent Atoms 51
     
     
  •   Software and Computing Hide
    Computing
    Data Collection XIA2
    Data Reduction (intensity integration) XIA2
    Data Reduction (data scaling) SCALA
    Structure Solution PHASER
    Structure Refinement REFMAC 5.6.0117
     
    Software
    refinement REFMAC version: 5.6.0117
    model building PHASER
    data collection Crysalis version: Pro