X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
pH 7
Temperature 293.0
Details 30% PEG8000, 0.3M AMMONIUM SULPHATE, 0.1M IMIDAZOLE, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 88.07 α = 89.62
b = 98.57 β = 88.85
c = 120.78 γ = 103.99
Symmetry
Space Group P 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD -- -- --
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X11 -- EMBL/DESY, Hamburg X11

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
3.22 120.78 89.25 0.13 -- -- -- -- 56715 0.0 -3.7 56.0

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 3.22 120.78 -- -- 56715 56715 568 89.25 0.2072 0.2072 0.2054 0.2609 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction -- -- -- -- -- -- -- -- --
Temperature Factor Modeling
Temperature Factor Value
Isotropic Thermal Model Isotropic
Mean Isotropic B 32.138
Anisotropic B[1][1] -0.11
Anisotropic B[1][2] 10.56
Anisotropic B[1][3] -5.51
Anisotropic B[2][2] -29.61
Anisotropic B[2][3] -5.42
Anisotropic B[3][3] 29.72
RMS Deviations
Key Refinement Restraint Deviation
r_gen_planes_other 0.003
r_bond_refined_d 0.018
r_chiral_restr 0.088
r_angle_refined_deg 1.603
r_gen_planes_refined 0.006
r_dihedral_angle_3_deg 16.26
r_dihedral_angle_1_deg 6.523
r_dihedral_angle_4_deg 11.99
r_angle_other_deg 1.028
r_dihedral_angle_2_deg 38.985
r_bond_other_d 0.002
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 26224
Nucleic Acid Atoms 0
Heterogen Atoms 163
Solvent Atoms 0

Software

Software
Software Name Purpose
DENZO data reduction
AMoRE phasing
REFMAC refinement version: 5.5.0110
SCALEPACK data scaling