X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
pH 7
Temperature 293.0
Details 30% PEG8000, 0.3M AMMONIUM SULPHATE, 0.1M IMIDAZOLE, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 88.07 α = 89.62
b = 98.57 β = 88.85
c = 120.78 γ = 103.99
Symmetry
Space Group P 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD -- -- --
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X11 -- EMBL/DESY, HAMBURG X11

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
3.22 120.78 89.25 0.13 -- -- -- -- 56715 0.0 -3.7 56.0

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 3.22 120.78 -- -- 56715 56715 568 89.25 0.2072 0.2072 0.2054 0.2609 RANDOM
Temperature Factor Modeling
Temperature Factor Value
Isotropic Thermal Model Isotropic
Mean Isotropic B 32.138
Anisotropic B[1][1] -0.11
Anisotropic B[1][2] 10.56
Anisotropic B[1][3] -5.51
Anisotropic B[2][2] -29.61
Anisotropic B[2][3] -5.42
Anisotropic B[3][3] 29.72
RMS Deviations
Key Refinement Restraint Deviation
r_gen_planes_other 0.003
r_gen_planes_refined 0.006
r_chiral_restr 0.088
r_dihedral_angle_4_deg 11.99
r_dihedral_angle_3_deg 16.26
r_dihedral_angle_2_deg 38.985
r_dihedral_angle_1_deg 6.523
r_angle_other_deg 1.028
r_angle_refined_deg 1.603
r_bond_other_d 0.002
r_bond_refined_d 0.018
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 26224
Nucleic Acid Atoms 0
Heterogen Atoms 163
Solvent Atoms 0

Software

Computing
Computing Package Purpose
DENZO Data Collection
DENZO Data Reduction (intensity integration)
SCALEPACK Data Reduction (data scaling)
AMoRE Structure Solution
REFMAC 5.5.0110 Structure Refinement
Software
Software Name Purpose
REFMAC version: 5.5.0110 refinement
AMoRE model building
DENZO data collection