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X-RAY DIFFRACTION
Materials and Methods page
3UXN
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, SITTING DROP
    pH 7
    Temperature 296.0
    Details PEG 3350, MES, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 296K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 77.95 α = 90
    b = 67.45 β = 116.14
    c = 83.36 γ = 90
     
    Space Group
    Space Group Name:    P 1 21 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type RIGAKU RAXIS
    Collection Date 2008-04-08
     
    Diffraction Radiation
    Monochromator Osmic Mirrors
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source ROTATING ANODE
    Type RIGAKU
    Wavelength List 1.5418
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 1.0
    Observed Criterion Sigma(I) 1.0
    Resolution(High) 2.5
    Resolution(Low) 15
    Number Reflections(Observed) 22615
    Percent Possible(Observed) 83.93
     
    High Resolution Shell Details
    Resolution(High) 2.5
    Resolution(Low) 2.5674
    Percent Possible(All) 77.0
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.5
    Resolution(Low) 15.002
    Cut-off Sigma(F) 0.07
    Number of Reflections(Observed) 22615
    Number of Reflections(R-Free) 1815
    Percent Reflections(Observed) 83.93
    R-Factor(All) 0.2521
    R-Factor(Observed) 0.2554
    R-Work 0.25
    R-Free 0.3166
    R-Free Selection Details random
     
    Temperature Factor Modeling
    Anisotropic B[1][1] -3.1587
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.3356
    Anisotropic B[2][2] -3.5404
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 6.6991
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.5
    Shell Resolution(Low) 2.5674
    Number of Reflections(R-Free) 141
    Number of Reflections(R-Work) 1437
    R-Factor(R-Work) 0.3405
    R-Factor(R-Free) 0.4201
    Percent Reflections(Observed) 77.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.5674
    Shell Resolution(Low) 2.6425
    Number of Reflections(R-Free) 120
    Number of Reflections(R-Work) 1545
    R-Factor(R-Work) 0.3019
    R-Factor(R-Free) 0.3851
    Percent Reflections(Observed) 81.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.6425
    Shell Resolution(Low) 2.7273
    Number of Reflections(R-Free) 141
    Number of Reflections(R-Work) 1567
    R-Factor(R-Work) 0.2911
    R-Factor(R-Free) 0.3357
    Percent Reflections(Observed) 83.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.7273
    Shell Resolution(Low) 2.8242
    Number of Reflections(R-Free) 140
    Number of Reflections(R-Work) 1658
    R-Factor(R-Work) 0.2532
    R-Factor(R-Free) 0.3397
    Percent Reflections(Observed) 87.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.8242
    Shell Resolution(Low) 2.9365
    Number of Reflections(R-Free) 142
    Number of Reflections(R-Work) 1686
    R-Factor(R-Work) 0.2626
    R-Factor(R-Free) 0.377
    Percent Reflections(Observed) 88.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.9365
    Shell Resolution(Low) 3.069
    Number of Reflections(R-Free) 156
    Number of Reflections(R-Work) 1674
    R-Factor(R-Work) 0.2593
    R-Factor(R-Free) 0.3268
    Percent Reflections(Observed) 89.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.069
    Shell Resolution(Low) 3.2293
    Number of Reflections(R-Free) 144
    Number of Reflections(R-Work) 1688
    R-Factor(R-Work) 0.2496
    R-Factor(R-Free) 0.3669
    Percent Reflections(Observed) 89.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.2293
    Shell Resolution(Low) 3.4294
    Number of Reflections(R-Free) 151
    Number of Reflections(R-Work) 1660
    R-Factor(R-Work) 0.2659
    R-Factor(R-Free) 0.3558
    Percent Reflections(Observed) 88.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.4294
    Shell Resolution(Low) 3.6905
    Number of Reflections(R-Free) 98
    Number of Reflections(R-Work) 1132
    R-Factor(R-Work) 0.3715
    R-Factor(R-Free) 0.4389
    Percent Reflections(Observed) 59.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.6905
    Shell Resolution(Low) 4.0552
    Number of Reflections(R-Free) 113
    Number of Reflections(R-Work) 1399
    R-Factor(R-Work) 0.2795
    R-Factor(R-Free) 0.3166
    Percent Reflections(Observed) 73.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.0552
    Shell Resolution(Low) 4.6269
    Number of Reflections(R-Free) 158
    Number of Reflections(R-Work) 1780
    R-Factor(R-Work) 0.1904
    R-Factor(R-Free) 0.2562
    Percent Reflections(Observed) 93.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.6269
    Shell Resolution(Low) 5.7736
    Number of Reflections(R-Free) 155
    Number of Reflections(R-Work) 1793
    R-Factor(R-Work) 0.205
    R-Factor(R-Free) 0.2548
    Percent Reflections(Observed) 93.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 5.7736
    Shell Resolution(Low) 15.0023
    Number of Reflections(R-Free) 156
    Number of Reflections(R-Work) 1781
    R-Factor(R-Work) 0.1793
    R-Factor(R-Free) 0.228
    Percent Reflections(Observed) 91.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_plane_restr 0.004
    f_chiral_restr 0.08
    f_dihedral_angle_d 18.3
    f_angle_d 1.271
    f_bond_d 0.009
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 5220
    Nucleic Acid Atoms 0
    Heterogen Atoms 0
    Solvent Atoms 159
     
     
  •   Software and Computing Hide
    Computing
    Data Collection d*TREK
    Data Reduction (intensity integration) HKL-2000
    Data Reduction (data scaling) HKL-2000
    Structure Solution PHENIX
    Structure Refinement PHENIX (phenix.refine: 1.6.2_432)
     
    Software
    refinement PHENIX version: (phenix.refine: 1.6.2_432)
    model building PHENIX
    data collection d*TREK