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X-RAY DIFFRACTION
Materials and Methods page
3UWJ
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 7.5
    Temperature 277.15
    Details 15% PEG 8000, 20mM sodium phosphate, 175mM sodium chloride, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 277.15K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 70.3 α = 90
    b = 71.2 β = 100.7
    c = 72.4 γ = 90
     
    Space Group
    Space Group Name:    C 1 2 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type RAYONIX MX-225
    Details Collimating Mirror
    Collection Date 2010-06-25
     
    Diffraction Radiation
    Monochromator Double Crystal Monochromator
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type BESSY BEAMLINE 14.2
    Wavelength List 0.91841
    Site BESSY
    Beamline 14.2
     
     
  •   Refinement Data Hide
    Reflection Details
    Resolution(High) 1.5
    Resolution(Low) 50
    Number Reflections(All) 55148
    Number Reflections(Observed) 55148
    Percent Possible(Observed) 97.3
    B(Isotropic) From Wilson Plot 13.66
    Redundancy 2.7
     
    High Resolution Shell Details
    Resolution(High) 1.5
    Resolution(Low) 1.53
    Percent Possible(All) 98.5
    Mean I Over Sigma(Observed) 1.9
    R-Sym I(Observed) 0.468
    Redundancy 2.6
    Number Unique Reflections(All) 2816
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 1.5
    Resolution(Low) 22.496
    Cut-off Sigma(F) 0.0
    Number of Reflections(all) 54651
    Number of Reflections(Observed) 52016
    Number of Reflections(R-Free) 2635
    Percent Reflections(Observed) 92.72
    R-Factor(All) 0.1613
    R-Factor(Observed) 0.1613
    R-Work 0.1601
    R-Free 0.1828
    R-Free Selection Details Random
     
    Temperature Factor Modeling
    Mean Isotropic B Value 22.1079
    Anisotropic B[1][1] 1.3047
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] -3.2169
    Anisotropic B[2][2] -1.9783
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 0.6735
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.5
    Shell Resolution(Low) 1.5273
    Number of Reflections(R-Free) 114
    Number of Reflections(R-Work) 2355
    R-Factor(R-Work) 0.2629
    R-Factor(R-Free) 0.2778
    Percent Reflections(Observed) 84.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.5273
    Shell Resolution(Low) 1.5566
    Number of Reflections(R-Free) 128
    Number of Reflections(R-Work) 2429
    R-Factor(R-Work) 0.2286
    R-Factor(R-Free) 0.2548
    Percent Reflections(Observed) 87.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.5566
    Shell Resolution(Low) 1.5884
    Number of Reflections(R-Free) 115
    Number of Reflections(R-Work) 2474
    R-Factor(R-Work) 0.2095
    R-Factor(R-Free) 0.2103
    Percent Reflections(Observed) 89.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.5884
    Shell Resolution(Low) 1.6229
    Number of Reflections(R-Free) 171
    Number of Reflections(R-Work) 2511
    R-Factor(R-Work) 0.1987
    R-Factor(R-Free) 0.213
    Percent Reflections(Observed) 91.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.6229
    Shell Resolution(Low) 1.6607
    Number of Reflections(R-Free) 120
    Number of Reflections(R-Work) 2548
    R-Factor(R-Work) 0.1839
    R-Factor(R-Free) 0.185
    Percent Reflections(Observed) 91.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.6607
    Shell Resolution(Low) 1.7022
    Number of Reflections(R-Free) 155
    Number of Reflections(R-Work) 2508
    R-Factor(R-Work) 0.1789
    R-Factor(R-Free) 0.2128
    Percent Reflections(Observed) 91.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.7022
    Shell Resolution(Low) 1.7482
    Number of Reflections(R-Free) 133
    Number of Reflections(R-Work) 2594
    R-Factor(R-Work) 0.1734
    R-Factor(R-Free) 0.1984
    Percent Reflections(Observed) 92.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.7482
    Shell Resolution(Low) 1.7996
    Number of Reflections(R-Free) 148
    Number of Reflections(R-Work) 2625
    R-Factor(R-Work) 0.1601
    R-Factor(R-Free) 0.228
    Percent Reflections(Observed) 94.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.7996
    Shell Resolution(Low) 1.8577
    Number of Reflections(R-Free) 135
    Number of Reflections(R-Work) 2662
    R-Factor(R-Work) 0.1569
    R-Factor(R-Free) 0.1956
    Percent Reflections(Observed) 94.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.8577
    Shell Resolution(Low) 1.924
    Number of Reflections(R-Free) 130
    Number of Reflections(R-Work) 2624
    R-Factor(R-Work) 0.1594
    R-Factor(R-Free) 0.1984
    Percent Reflections(Observed) 94.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.924
    Shell Resolution(Low) 2.001
    Number of Reflections(R-Free) 143
    Number of Reflections(R-Work) 2647
    R-Factor(R-Work) 0.1535
    R-Factor(R-Free) 0.1779
    Percent Reflections(Observed) 95.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.001
    Shell Resolution(Low) 2.092
    Number of Reflections(R-Free) 132
    Number of Reflections(R-Work) 2685
    R-Factor(R-Work) 0.152
    R-Factor(R-Free) 0.1867
    Percent Reflections(Observed) 96.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.092
    Shell Resolution(Low) 2.2022
    Number of Reflections(R-Free) 134
    Number of Reflections(R-Work) 2688
    R-Factor(R-Work) 0.1486
    R-Factor(R-Free) 0.1655
    Percent Reflections(Observed) 96.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.2022
    Shell Resolution(Low) 2.3401
    Number of Reflections(R-Free) 145
    Number of Reflections(R-Work) 2674
    R-Factor(R-Work) 0.1587
    R-Factor(R-Free) 0.1817
    Percent Reflections(Observed) 95.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.3401
    Shell Resolution(Low) 2.5206
    Number of Reflections(R-Free) 148
    Number of Reflections(R-Work) 2704
    R-Factor(R-Work) 0.1542
    R-Factor(R-Free) 0.1771
    Percent Reflections(Observed) 96.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.5206
    Shell Resolution(Low) 2.7738
    Number of Reflections(R-Free) 155
    Number of Reflections(R-Work) 2671
    R-Factor(R-Work) 0.1691
    R-Factor(R-Free) 0.1946
    Percent Reflections(Observed) 95.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.7738
    Shell Resolution(Low) 3.1742
    Number of Reflections(R-Free) 157
    Number of Reflections(R-Work) 2672
    R-Factor(R-Work) 0.1614
    R-Factor(R-Free) 0.1935
    Percent Reflections(Observed) 95.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.1742
    Shell Resolution(Low) 3.9955
    Number of Reflections(R-Free) 123
    Number of Reflections(R-Work) 2672
    R-Factor(R-Work) 0.1393
    R-Factor(R-Free) 0.164
    Percent Reflections(Observed) 94.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.9955
    Shell Resolution(Low) 22.4984
    Number of Reflections(R-Free) 149
    Number of Reflections(R-Work) 2638
    R-Factor(R-Work) 0.1491
    R-Factor(R-Free) 0.1488
    Percent Reflections(Observed) 92.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_plane_restr 0.005
    f_chiral_restr 0.074
    f_dihedral_angle_d 16.885
    f_angle_d 1.095
    f_bond_d 0.018
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 2341
    Nucleic Acid Atoms 0
    Heterogen Atoms 68
    Solvent Atoms 349
     
     
  •   Software and Computing Hide
    Computing
    Data Collection MAR345dtb
    Data Reduction (intensity integration) HKL-2000
    Data Reduction (data scaling) HKL-2000
    Structure Solution PHASER
    Structure Refinement PHENIX (phenix.refine: 1.7_650)
     
    Software
    refinement PHENIX version: (phenix.refine: 1.7_650)
    model building PHASER
    data collection MAR345dtb