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X-RAY DIFFRACTION
Materials and Methods page
3UVC
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 7.5
    Temperature 277.0
    Details 50mM imidazole pH 7.5, 200-400mM CaCl, 20% PEG 1k, VAPOR DIFFUSION, HANGING DROP, temperature 277K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 39.75 α = 90
    b = 60.62 β = 103.1
    c = 58.4 γ = 90
     
    Space Group
    Space Group Name:    P 1 21 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type ADSC QUANTUM 315r
    Collection Date 2008-06-25
     
    Diffraction Radiation
    Monochromator Silicon (1 1 1) channel-cut, silicon toroidal mirror coated with Rhodium
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type ESRF BEAMLINE ID23-1
    Wavelength List 1.072250
    Site ESRF
    Beamline ID23-1
     
     
  •   Refinement Data Hide
    Reflection Details
    Resolution(High) 1.3
    Resolution(Low) 41.49
    Number Reflections(All) 65111
    Number Reflections(Observed) 65111
    Percent Possible(Observed) 98.2
    R Merge I(Observed) 0.08
    Redundancy 2.8
     
    High Resolution Shell Details
    Resolution(High) 1.3
    Resolution(Low) 1.37
    Percent Possible(All) 89.1
    R Merge I(Observed) 0.635
    Mean I Over Sigma(Observed) 1.2
    R-Sym I(Observed) 0.635
    Redundancy 2.1
    Number Unique Reflections(All) 8579
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 1.3
    Resolution(Low) 41.487
    Cut-off Sigma(F) 0.0
    Number of Reflections(Observed) 64982
    Number of Reflections(R-Free) 3294
    Percent Reflections(Observed) 100.0
    R-Factor(Observed) 0.1324
    R-Work 0.1302
    R-Free 0.1736
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 19.7329
    Anisotropic B[1][1] -0.93
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] -0.22
    Anisotropic B[2][2] 0.93
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -0.1
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.3
    Shell Resolution(Low) 1.334
    Number of Reflections(R-Free) 217
    Number of Reflections(R-Work) 3826
    R-Factor(R-Work) 0.273
    R-Factor(R-Free) 0.269
    Percent Reflections(Observed) 100.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_rigid_bond_restr 1.301
    r_bond_refined_d 0.01
    r_angle_refined_deg 1.465
    r_dihedral_angle_1_deg 5.567
    r_dihedral_angle_2_deg 31.981
    r_dihedral_angle_3_deg 10.438
    r_dihedral_angle_4_deg 16.419
    r_chiral_restr 0.091
    r_gen_planes_refined 0.007
    r_mcbond_it 1.299
    r_mcangle_it 2.055
    r_scbond_it 2.695
    r_scangle_it 3.724
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 2451
    Nucleic Acid Atoms 0
    Heterogen Atoms 78
    Solvent Atoms 490
     
     
  •   Software and Computing Hide
    Computing
    Data Collection ADSC Quantum
    Data Reduction (intensity integration) MOSFLM
    Data Reduction (data scaling) SCALA
    Structure Solution PHASER
    Structure Refinement REFMAC 5.5.0109
     
    Software
    data extraction pdb_extract version: 3.10
    refinement REFMAC5
    molecular replacement Phaser version: 2.1.4
    data reduction SCALA version: 3.2.25
    data collection Mosflm