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X-RAY DIFFRACTION
Materials and Methods page
3UVA
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION
    pH 6
    Temperature 283.0
    Details 10 % (w/v) PEG 8000, 0.1M HEPES pH 6.0, 0.2M sodium acetate , VAPOR DIFFUSION, temperature 283K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 83.37 α = 90
    b = 164.78 β = 117.01
    c = 92.82 γ = 90
     
    Space Group
    Space Group Name:    P 1 21 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type ADSC QUANTUM 210
    Collection Date 2010-06-11
     
    Diffraction Radiation
    Monochromator GRAPHITE
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type PAL/PLS BEAMLINE 4A
    Wavelength List 1.00000
    Site PAL/PLS
    Beamline 4A
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 1.0
    Observed Criterion Sigma(I) 1.0
    Resolution(High) 2.69
    Resolution(Low) 50
    Number Reflections(Observed) 53466
    Percent Possible(Observed) 88.3
     
    High Resolution Shell Details
    Resolution(High) 2.692
    Resolution(Low) 2.75
    Percent Possible(All) 91.2
    Mean I Over Sigma(Observed) 2.5
    R-Sym I(Observed) 0.43
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.69
    Resolution(Low) 45.87
    Number of Reflections(all) 53466
    Number of Reflections(Observed) 51528
    Number of Reflections(R-Free) 2778
    Percent Reflections(Observed) 87.98
    R-Factor(All) 0.18958
    R-Factor(Observed) 0.18958
    R-Work 0.18543
    R-Free 0.26597
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 32.846
    Anisotropic B[1][1] -0.01
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.01
    Anisotropic B[2][2] 0.02
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 0.0
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.692
    Shell Resolution(Low) 2.761
    Number of Reflections(R-Free) 196
    Number of Reflections(R-Work) 3510
    R-Factor(R-Work) 0.25
    R-Factor(R-Free) 0.352
    Percent Reflections(Observed) 81.99
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_scangle_it 3.2
    r_scbond_it 1.89
    r_mcangle_it 1.218
    r_mcbond_it 0.623
    r_gen_planes_refined 0.007
    r_chiral_restr 0.128
    r_dihedral_angle_4_deg 20.962
    r_dihedral_angle_3_deg 21.843
    r_dihedral_angle_2_deg 39.079
    r_dihedral_angle_1_deg 6.562
    r_angle_refined_deg 1.694
    r_bond_refined_d 0.015
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 13188
    Nucleic Acid Atoms 0
    Heterogen Atoms 8
    Solvent Atoms 453
     
     
  •   Software and Computing Hide
    Computing
    Data Collection HKL-2000
    Data Reduction (intensity integration) DENZO
    Data Reduction (data scaling) SCALEPACK
    Structure Solution MolRep
    Structure Refinement REFMAC 5.5.0109
     
    Software
    refinement REFMAC version: 5.5.0109
    model building MolRep
    data collection HKL-2000