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X-RAY DIFFRACTION
Materials and Methods page
3USE
  •   Crystallization Hide
    Crystallization Experiments
    Method vapor diffusion
    pH 8.5
    Temperature 298.0
    Details PEG4000, LiSO4, DTT, DMM, pH 8.5, vapor diffusion, temperature 298K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 93.93 α = 90
    b = 97.79 β = 90
    c = 183.29 γ = 90
     
    Space Group
    Space Group Name:    P 21 21 21
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type ADSC QUANTUM 315r
    Details Toroidal mirror
    Collection Date 2011-07-02
     
    Diffraction Radiation
    Monochromator Silicon (1 1 1)
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type ESRF BEAMLINE ID23-1
    Wavelength List 0.94645
    Site ESRF
    Beamline ID23-1
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 0.0
    Observed Criterion Sigma(I) -3.0
    Resolution(High) 1.67
    Resolution(Low) 100
    Number Reflections(All) 372270
    Number Reflections(Observed) 194962
    Percent Possible(Observed) 98.3
    R Merge I(Observed) 0.062
    B(Isotropic) From Wilson Plot 18.782
    Redundancy 1.905
     
    High Resolution Shell Details
    Resolution(High) 1.67
    Resolution(Low) 1.74
    Percent Possible(All) 98.9
    R Merge I(Observed) 0.38
    Mean I Over Sigma(Observed) 2.46
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 1.67
    Resolution(Low) 29.82
    Cut-off Sigma(F) 0.0
    Number of Reflections(all) 194961
    Number of Reflections(Observed) 194961
    Number of Reflections(R-Free) 9644
    Percent Reflections(Observed) 99.77
    R-Factor(All) 0.1222
    R-Factor(Observed) 0.1222
    R-Work 0.1198
    R-Free 0.1684
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Isotropic Thermal Model anisotropic
    Mean Isotropic B Value 13.1137
    Anisotropic B[1][1] 0.05
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] 0.33
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -0.38
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.67
    Shell Resolution(Low) 1.713
    Number of Reflections(Observed) 13579
    Number of Reflections(R-Free) 729
    Number of Reflections(R-Work) 13579
    R-Factor(R-Work) 0.176
    R-Factor(R-Free) 0.241
    Percent Reflections(Observed) 99.94
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_rigid_bond_restr 2.428
    r_bond_refined_d 0.011
    r_angle_refined_deg 1.239
    r_dihedral_angle_1_deg 5.642
    r_dihedral_angle_2_deg 35.327
    r_dihedral_angle_3_deg 12.445
    r_dihedral_angle_4_deg 16.695
    r_chiral_restr 0.086
    r_gen_planes_refined 0.007
    r_mcbond_it 2.009
    r_mcangle_it 2.928
    r_scbond_it 4.386
    r_scangle_it 6.107
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 13228
    Nucleic Acid Atoms 0
    Heterogen Atoms 151
    Solvent Atoms 1257
     
     
  •   Software and Computing Hide
    Computing
    Data Collection MXCuBE
    Data Reduction (intensity integration) XDS
    Data Reduction (data scaling) XSCALE
    Structure Solution PHASER
    Structure Refinement REFMAC 5.5.0109
     
    Software
    data extraction pdb_extract version: 3.10
    refinement REFMAC5
    molecular replacement Phaser
    data reduction Xscale