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X-RAY DIFFRACTION
Materials and Methods page
3UQR
  •   Crystallization Hide
    Crystallization Experiments
    Method vapor diffusion, hanging drop
    pH 5
    Temperature 293.0
    Details 1.0M Ammonium Sulfate, 0.1M Soldium Citrate, pH 5.0, vapor diffusion, hanging drop, temperature 293K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 107.51 α = 90
    b = 132.12 β = 90
    c = 163.39 γ = 90
     
    Space Group
    Space Group Name:    P 21 21 21
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Collection Date 2011-03-21
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type SSRF BEAMLINE BL17U
    Wavelength List 0.97915
    Site SSRF
    Beamline BL17U
     
     
  •   Refinement Data Hide
    Reflection Details
    Resolution(High) 3.06
    Resolution(Low) 74.28
    Number Reflections(All) 43268
    Number Reflections(Observed) 43268
    Percent Possible(Observed) 96.5
    B(Isotropic) From Wilson Plot 51.41
    Redundancy 6.4
     
    High Resolution Shell Details
    Resolution(High) 3.06
    Resolution(Low) 3.22
    Percent Possible(All) 80.1
    R Merge I(Observed) 0.344
    Mean I Over Sigma(Observed) 2.1
    R-Sym I(Observed) 0.344
    Redundancy 3.6
    Number Unique Reflections(All) 5155
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 3.056
    Resolution(Low) 66.061
    Cut-off Sigma(F) 0.0
    Number of Reflections(all) 43268
    Number of Reflections(Observed) 41048
    Number of Reflections(R-Free) 2060
    Percent Reflections(Observed) 91.65
    R-Factor(Observed) 0.1943
    R-Work 0.1918
    R-Free 0.2418
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 57.3276
    Anisotropic B[1][1] 46.1344
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] -19.6634
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -26.471
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.0564
    Shell Resolution(Low) 3.1275
    Number of Reflections(R-Free) 81
    Number of Reflections(R-Work) 1837
    R-Factor(R-Work) 0.2754
    R-Factor(R-Free) 0.3539
    Percent Reflections(Observed) 65.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.1275
    Shell Resolution(Low) 3.2057
    Number of Reflections(R-Free) 109
    Number of Reflections(R-Work) 2002
    R-Factor(R-Work) 0.2618
    R-Factor(R-Free) 0.3082
    Percent Reflections(Observed) 71.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.2057
    Shell Resolution(Low) 3.2924
    Number of Reflections(R-Free) 119
    Number of Reflections(R-Work) 2239
    R-Factor(R-Work) 0.2411
    R-Factor(R-Free) 0.3309
    Percent Reflections(Observed) 80.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.2924
    Shell Resolution(Low) 3.3892
    Number of Reflections(R-Free) 123
    Number of Reflections(R-Work) 2489
    R-Factor(R-Work) 0.2139
    R-Factor(R-Free) 0.253
    Percent Reflections(Observed) 88.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.3892
    Shell Resolution(Low) 3.4986
    Number of Reflections(R-Free) 136
    Number of Reflections(R-Work) 2569
    R-Factor(R-Work) 0.1923
    R-Factor(R-Free) 0.2332
    Percent Reflections(Observed) 92.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.4986
    Shell Resolution(Low) 3.6237
    Number of Reflections(R-Free) 140
    Number of Reflections(R-Work) 2641
    R-Factor(R-Work) 0.1862
    R-Factor(R-Free) 0.256
    Percent Reflections(Observed) 94.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.6237
    Shell Resolution(Low) 3.7687
    Number of Reflections(R-Free) 132
    Number of Reflections(R-Work) 2682
    R-Factor(R-Work) 0.1677
    R-Factor(R-Free) 0.227
    Percent Reflections(Observed) 96.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.7687
    Shell Resolution(Low) 3.9402
    Number of Reflections(R-Free) 139
    Number of Reflections(R-Work) 2700
    R-Factor(R-Work) 0.1547
    R-Factor(R-Free) 0.2194
    Percent Reflections(Observed) 96.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.9402
    Shell Resolution(Low) 4.1479
    Number of Reflections(R-Free) 163
    Number of Reflections(R-Work) 2755
    R-Factor(R-Work) 0.1427
    R-Factor(R-Free) 0.2019
    Percent Reflections(Observed) 97.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.1479
    Shell Resolution(Low) 4.4078
    Number of Reflections(R-Free) 149
    Number of Reflections(R-Work) 2743
    R-Factor(R-Work) 0.1486
    R-Factor(R-Free) 0.1939
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.4078
    Shell Resolution(Low) 4.748
    Number of Reflections(R-Free) 146
    Number of Reflections(R-Work) 2803
    R-Factor(R-Work) 0.143
    R-Factor(R-Free) 0.1701
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.748
    Shell Resolution(Low) 5.2256
    Number of Reflections(R-Free) 157
    Number of Reflections(R-Work) 2808
    R-Factor(R-Work) 0.1754
    R-Factor(R-Free) 0.2741
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 5.2256
    Shell Resolution(Low) 5.9814
    Number of Reflections(R-Free) 162
    Number of Reflections(R-Work) 2833
    R-Factor(R-Work) 0.2126
    R-Factor(R-Free) 0.2509
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 5.9814
    Shell Resolution(Low) 7.5342
    Number of Reflections(R-Free) 150
    Number of Reflections(R-Work) 2879
    R-Factor(R-Work) 0.2058
    R-Factor(R-Free) 0.2601
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 7.5342
    Shell Resolution(Low) 66.0759
    Number of Reflections(R-Free) 154
    Number of Reflections(R-Work) 3008
    R-Factor(R-Work) 0.248
    R-Factor(R-Free) 0.2588
    Percent Reflections(Observed) 99.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_dihedral_angle_d 17.667
    f_plane_restr 0.005
    f_chiral_restr 0.08
    f_angle_d 1.278
    f_bond_d 0.009
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 8880
    Nucleic Acid Atoms 0
    Heterogen Atoms 0
    Solvent Atoms 83
     
     
  •   Software and Computing Hide
    Computing
    Data Collection ADSC Quantum
    Data Reduction (intensity integration) MOSFLM
    Data Reduction (data scaling) SCALA
    Structure Solution PHASER
    Structure Refinement PHENIX (phenix.refine: 1.7_650)
     
    Software
    data extraction pdb_extract version: 3.10
    refinement phenix
    molecular replacement Phaser
    data reduction SCALA version: 3.3.20