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X-RAY DIFFRACTION
Materials and Methods page
3UQ6
  •   Crystallization Hide
    Crystallization Experiments
    Temperature 293.0
    Details 100mM Bis-tris, 200mM LiSO4, 16-20% PEG 3350, VAPOR DIFFUSION, HANGING DROP, temperature 293K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 59.98 α = 90
    b = 180.53 β = 90
    c = 78.33 γ = 90
     
    Space Group
    Space Group Name:    P 21 21 2
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type MARMOSAIC 225 mm CCD
    Collection Date 2008-09-26
     
    Diffraction Radiation
    Monochromator DCM SI(111)
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type LNLS BEAMLINE W01B-MX2
    Wavelength 1.45
    Site LNLS
    Beamline W01B-MX2
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma(I) 2.0
    Resolution(High) 2.3
    Resolution(Low) 180.53
    Number Reflections(Observed) 35871
    Percent Possible(Observed) 93.3
    R Merge I(Observed) 0.103
    Redundancy 3.4
     
    High Resolution Shell Details
    Resolution(High) 2.3
    Resolution(Low) 2.42
    Percent Possible(All) 88.6
    R Merge I(Observed) 0.552
    Mean I Over Sigma(Observed) 1.4
    R-Sym I(Observed) 0.552
    Redundancy 3.4
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.3
    Resolution(Low) 49.958
    Cut-off Sigma(F) 1.35
    Number of Reflections(all) 38633
    Number of Reflections(Observed) 35822
    Number of Reflections(R-Free) 1788
    Percent Reflections(Observed) 92.64
    R-Factor(Observed) 0.2092
    R-Work 0.208
    R-Free 0.2302
     
    Temperature Factor Modeling
    Mean Isotropic B Value 43.24
    Anisotropic B[1][1] 19.2487
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] -13.0254
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -6.0073
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.3
    Shell Resolution(Low) 2.3622
    Number of Reflections(R-Free) 127
    Number of Reflections(R-Work) 2422
    R-Factor(R-Work) 0.2682
    R-Factor(R-Free) 0.2864
    Percent Reflections(Observed) 88.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.3622
    Shell Resolution(Low) 2.4317
    Number of Reflections(R-Free) 122
    Number of Reflections(R-Work) 2478
    R-Factor(R-Work) 0.258
    R-Factor(R-Free) 0.3301
    Percent Reflections(Observed) 88.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.4317
    Shell Resolution(Low) 2.5102
    Number of Reflections(R-Free) 130
    Number of Reflections(R-Work) 2467
    R-Factor(R-Work) 0.2581
    R-Factor(R-Free) 0.2995
    Percent Reflections(Observed) 89.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.5102
    Shell Resolution(Low) 2.5999
    Number of Reflections(R-Free) 124
    Number of Reflections(R-Work) 2503
    R-Factor(R-Work) 0.246
    R-Factor(R-Free) 0.2749
    Percent Reflections(Observed) 89.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.5999
    Shell Resolution(Low) 2.704
    Number of Reflections(R-Free) 143
    Number of Reflections(R-Work) 2485
    R-Factor(R-Work) 0.2374
    R-Factor(R-Free) 0.2546
    Percent Reflections(Observed) 90.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.704
    Shell Resolution(Low) 2.8271
    Number of Reflections(R-Free) 136
    Number of Reflections(R-Work) 2537
    R-Factor(R-Work) 0.247
    R-Factor(R-Free) 0.3022
    Percent Reflections(Observed) 91.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.8271
    Shell Resolution(Low) 2.9761
    Number of Reflections(R-Free) 124
    Number of Reflections(R-Work) 2587
    R-Factor(R-Work) 0.2414
    R-Factor(R-Free) 0.2603
    Percent Reflections(Observed) 92.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.9761
    Shell Resolution(Low) 3.1625
    Number of Reflections(R-Free) 148
    Number of Reflections(R-Work) 2601
    R-Factor(R-Work) 0.2343
    R-Factor(R-Free) 0.2453
    Percent Reflections(Observed) 93.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.1625
    Shell Resolution(Low) 3.4067
    Number of Reflections(R-Free) 151
    Number of Reflections(R-Work) 2660
    R-Factor(R-Work) 0.2201
    R-Factor(R-Free) 0.2573
    Percent Reflections(Observed) 95.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.4067
    Shell Resolution(Low) 3.7494
    Number of Reflections(R-Free) 160
    Number of Reflections(R-Work) 2748
    R-Factor(R-Work) 0.1977
    R-Factor(R-Free) 0.1932
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.7494
    Shell Resolution(Low) 4.2917
    Number of Reflections(R-Free) 149
    Number of Reflections(R-Work) 2827
    R-Factor(R-Work) 0.1777
    R-Factor(R-Free) 0.184
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.2917
    Shell Resolution(Low) 5.406
    Number of Reflections(R-Free) 145
    Number of Reflections(R-Work) 2837
    R-Factor(R-Work) 0.1592
    R-Factor(R-Free) 0.2019
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 5.406
    Shell Resolution(Low) 49.9702
    Number of Reflections(R-Free) 129
    Number of Reflections(R-Work) 2882
    R-Factor(R-Work) 0.1967
    R-Factor(R-Free) 0.2092
    Percent Reflections(Observed) 94.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_plane_restr 0.002
    f_chiral_restr 0.042
    f_dihedral_angle_d 11.53
    f_angle_d 0.573
    f_bond_d 0.002
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 5244
    Nucleic Acid Atoms 0
    Heterogen Atoms 86
    Solvent Atoms 184
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) MOSFLM
    Data Reduction (data scaling) SCALA
    Structure Solution PHASER
    Structure Refinement PHENIX (phenix.refine: 1.8_1069)
     
    Software
    data extraction pdb_extract version: 3.10
    refinement phenix
    density modification DM
    molecular replacement Phaser
    data reduction SCALA version: 3.2.25
    data collection Mosflm