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X-RAY DIFFRACTION
Materials and Methods page
3UL5
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 7
    Temperature 293.0
    Details 100mM Bis-tris pH 7.0, 3.5M Sodium Formate, VAPOR DIFFUSION, HANGING DROP, temperature 293K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 99.77 α = 90
    b = 113.99 β = 90
    c = 86.78 γ = 90
     
    Space Group
    Space Group Name:    C 2 2 21
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type MARMOSAIC 225 mm CCD
    Details Si(111)
    Collection Date 2008-06-26
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type LNLS BEAMLINE W01B-MX2
    Wavelength List 1.45
    Site LNLS
    Beamline W01B-MX2
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 2.0
    Observed Criterion Sigma(I) 2.0
    Resolution(High) 2.3
    Resolution(Low) 57
    Number Reflections(All) 22328
    Number Reflections(Observed) 22328
    Percent Possible(Observed) 100.0
    B(Isotropic) From Wilson Plot 29.42
     
    High Resolution Shell Details
    Resolution(High) 2.3
    Percent Possible(All) 100.0
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.3
    Resolution(Low) 43.388
    Cut-off Sigma(F) 0.0
    Number of Reflections(Observed) 21386
    Number of Reflections(R-Free) 1091
    Percent Reflections(Observed) 95.78
    R-Factor(Observed) 0.226
    R-Work 0.2247
    R-Free 0.2517
    R-Free Selection Details Random
     
    Temperature Factor Modeling
    Mean Isotropic B Value 34.2601
    Anisotropic B[1][1] 1.313
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] -0.7964
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -0.5166
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.3
    Shell Resolution(Low) 2.4048
    Number of Reflections(R-Free) 127
    Number of Reflections(R-Work) 2258
    R-Factor(R-Work) 0.2785
    R-Factor(R-Free) 0.3016
    Percent Reflections(Observed) 87.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.4048
    Shell Resolution(Low) 2.5316
    Number of Reflections(R-Free) 126
    Number of Reflections(R-Work) 2413
    R-Factor(R-Work) 0.2691
    R-Factor(R-Free) 0.2976
    Percent Reflections(Observed) 92.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.5316
    Shell Resolution(Low) 2.6901
    Number of Reflections(R-Free) 140
    Number of Reflections(R-Work) 2444
    R-Factor(R-Work) 0.2568
    R-Factor(R-Free) 0.3058
    Percent Reflections(Observed) 94.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.6901
    Shell Resolution(Low) 2.8978
    Number of Reflections(R-Free) 146
    Number of Reflections(R-Work) 2510
    R-Factor(R-Work) 0.2609
    R-Factor(R-Free) 0.31
    Percent Reflections(Observed) 96.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.8978
    Shell Resolution(Low) 3.1894
    Number of Reflections(R-Free) 126
    Number of Reflections(R-Work) 2613
    R-Factor(R-Work) 0.2318
    R-Factor(R-Free) 0.2611
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.1894
    Shell Resolution(Low) 3.6507
    Number of Reflections(R-Free) 139
    Number of Reflections(R-Work) 2616
    R-Factor(R-Work) 0.2143
    R-Factor(R-Free) 0.2333
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.6507
    Shell Resolution(Low) 4.5986
    Number of Reflections(R-Free) 152
    Number of Reflections(R-Work) 2667
    R-Factor(R-Work) 0.1807
    R-Factor(R-Free) 0.2099
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.5986
    Shell Resolution(Low) 43.3959
    Number of Reflections(R-Free) 135
    Number of Reflections(R-Work) 2774
    R-Factor(R-Work) 0.2254
    R-Factor(R-Free) 0.2393
    Percent Reflections(Observed) 99.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_dihedral_angle_d 16.381
    f_plane_restr 0.002
    f_chiral_restr 0.042
    f_angle_d 0.677
    f_bond_d 0.003
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 2603
    Nucleic Acid Atoms 0
    Heterogen Atoms 13
    Solvent Atoms 130
     
     
  •   Software and Computing Hide
    Computing
    Data Collection MAR345dtb
    Data Reduction (intensity integration) MOSFLM
    Data Reduction (data scaling) SCALA
    Structure Solution PHASER
    Structure Refinement PHENIX (phenix.refine: 2011_01_25_1225)
     
    Software
    data extraction pdb_extract version: 3.10
    refinement phenix