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X-RAY DIFFRACTION
Materials and Methods page
3UKX
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 7.5
    Temperature 293.0
    Details 0.75M sodium citrate, 10mM DTT, 0.1M HEPES, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 79.19 α = 90
    b = 90.19 β = 90
    c = 100.22 γ = 90
     
    Space Group
    Space Group Name:    P 21 21 21
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type ADSC QUANTUM 315r
    Collection Date 2009-07-23
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type AUSTRALIAN SYNCHROTRON BEAMLINE MX1
    Wavelength List 0.953693
    Site AUSTRALIAN SYNCHROTRON
    Beamline MX1
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 1.0
    Observed Criterion Sigma(I) 1.0
    Resolution(High) 2.2
    Resolution(Low) 43.81
    Number Reflections(Observed) 37159
    Percent Possible(Observed) 72.2
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.2
    Resolution(Low) 43.803
    Cut-off Sigma(F) 0.0
    Number of Reflections(Observed) 36048
    Number of Reflections(R-Free) 1800
    Percent Reflections(Observed) 97.16
    R-Factor(Observed) 0.1789
    R-Work 0.1777
    R-Free 0.2033
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 33.1448
    Anisotropic B[1][1] -0.8293
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] -3.5517
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 4.381
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.2
    Shell Resolution(Low) 2.2595
    Number of Reflections(R-Free) 141
    Number of Reflections(R-Work) 2431
    R-Factor(R-Work) 0.2592
    R-Factor(R-Free) 0.3145
    Percent Reflections(Observed) 92.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.2595
    Shell Resolution(Low) 2.326
    Number of Reflections(R-Free) 133
    Number of Reflections(R-Work) 2432
    R-Factor(R-Work) 0.2383
    R-Factor(R-Free) 0.2914
    Percent Reflections(Observed) 92.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.326
    Shell Resolution(Low) 2.401
    Number of Reflections(R-Free) 125
    Number of Reflections(R-Work) 2558
    R-Factor(R-Work) 0.2085
    R-Factor(R-Free) 0.2384
    Percent Reflections(Observed) 95.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.401
    Shell Resolution(Low) 2.4869
    Number of Reflections(R-Free) 126
    Number of Reflections(R-Work) 2562
    R-Factor(R-Work) 0.1993
    R-Factor(R-Free) 0.2564
    Percent Reflections(Observed) 96.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.4869
    Shell Resolution(Low) 2.5864
    Number of Reflections(R-Free) 125
    Number of Reflections(R-Work) 2600
    R-Factor(R-Work) 0.189
    R-Factor(R-Free) 0.2282
    Percent Reflections(Observed) 97.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.5864
    Shell Resolution(Low) 2.7041
    Number of Reflections(R-Free) 131
    Number of Reflections(R-Work) 2624
    R-Factor(R-Work) 0.1858
    R-Factor(R-Free) 0.2155
    Percent Reflections(Observed) 97.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.7041
    Shell Resolution(Low) 2.8467
    Number of Reflections(R-Free) 152
    Number of Reflections(R-Work) 2638
    R-Factor(R-Work) 0.1743
    R-Factor(R-Free) 0.2215
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.8467
    Shell Resolution(Low) 3.025
    Number of Reflections(R-Free) 132
    Number of Reflections(R-Work) 2673
    R-Factor(R-Work) 0.1793
    R-Factor(R-Free) 0.2069
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.025
    Shell Resolution(Low) 3.2585
    Number of Reflections(R-Free) 147
    Number of Reflections(R-Work) 2670
    R-Factor(R-Work) 0.1778
    R-Factor(R-Free) 0.2138
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.2585
    Shell Resolution(Low) 3.5862
    Number of Reflections(R-Free) 152
    Number of Reflections(R-Work) 2692
    R-Factor(R-Work) 0.1775
    R-Factor(R-Free) 0.2067
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.5862
    Shell Resolution(Low) 4.1048
    Number of Reflections(R-Free) 148
    Number of Reflections(R-Work) 2722
    R-Factor(R-Work) 0.1551
    R-Factor(R-Free) 0.18
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.1048
    Shell Resolution(Low) 5.1703
    Number of Reflections(R-Free) 144
    Number of Reflections(R-Work) 2742
    R-Factor(R-Work) 0.1392
    R-Factor(R-Free) 0.1512
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 5.1703
    Shell Resolution(Low) 43.8118
    Number of Reflections(R-Free) 144
    Number of Reflections(R-Work) 2904
    R-Factor(R-Work) 0.1788
    R-Factor(R-Free) 0.1701
    Percent Reflections(Observed) 100.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_dihedral_angle_d 12.394
    f_plane_restr 0.004
    f_chiral_restr 0.059
    f_angle_d 0.861
    f_bond_d 0.005
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 3462
    Nucleic Acid Atoms 0
    Heterogen Atoms 0
    Solvent Atoms 316
     
     
  •   Software and Computing Hide
    Computing
    Data Collection Blu-Ice
    Data Reduction (intensity integration) XDS
    Data Reduction (data scaling) XSCALE
    Structure Refinement PHENIX (phenix.refine: 1.7_650)
     
    Software
    refinement PHENIX version: (phenix.refine: 1.7_650)
    data collection Blu-Ice