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X-RAY DIFFRACTION
Materials and Methods page
3UKW
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 6.5
    Temperature 293.0
    Details 0.8M sodium citrate, 10mM DTT, 0.1M BisTris, 10% glycerol, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 78.56 α = 90
    b = 89.49 β = 90
    c = 99.9 γ = 90
     
    Space Group
    Space Group Name:    P 21 21 21
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type ADSC QUANTUM 315r
    Collection Date 2009-07-23
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type AUSTRALIAN SYNCHROTRON BEAMLINE MX1
    Wavelength List 0.953693
    Site AUSTRALIAN SYNCHROTRON
    Beamline MX1
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 1.0
    Observed Criterion Sigma(I) 1.0
    Resolution(High) 2.1
    Resolution(Low) 43.6
    Number Reflections(Observed) 41865
    Percent Possible(Observed) 76.8
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.1
    Resolution(Low) 42.151
    Cut-off Sigma(I) 4.3
    Cut-off Sigma(F) 0.0
    Number of Reflections(Observed) 40755
    Number of Reflections(R-Free) 2056
    Percent Reflections(Observed) 97.49
    R-Factor(Observed) 0.1777
    R-Work 0.1765
    R-Free 0.1996
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 28.8024
    Anisotropic B[1][1] -0.3893
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] -1.0938
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 1.483
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.1
    Shell Resolution(Low) 2.1489
    Number of Reflections(R-Free) 134
    Number of Reflections(R-Work) 2460
    R-Factor(R-Work) 0.2069
    R-Factor(R-Free) 0.2457
    Percent Reflections(Observed) 95.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.1489
    Shell Resolution(Low) 2.2026
    Number of Reflections(R-Free) 120
    Number of Reflections(R-Work) 2496
    R-Factor(R-Work) 0.1994
    R-Factor(R-Free) 0.2461
    Percent Reflections(Observed) 95.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.2026
    Shell Resolution(Low) 2.2621
    Number of Reflections(R-Free) 132
    Number of Reflections(R-Work) 2415
    R-Factor(R-Work) 0.2241
    R-Factor(R-Free) 0.2499
    Percent Reflections(Observed) 93.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.2621
    Shell Resolution(Low) 2.3287
    Number of Reflections(R-Free) 114
    Number of Reflections(R-Work) 2447
    R-Factor(R-Work) 0.1886
    R-Factor(R-Free) 0.2501
    Percent Reflections(Observed) 93.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.3287
    Shell Resolution(Low) 2.4039
    Number of Reflections(R-Free) 145
    Number of Reflections(R-Work) 2516
    R-Factor(R-Work) 0.1698
    R-Factor(R-Free) 0.2229
    Percent Reflections(Observed) 97.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.4039
    Shell Resolution(Low) 2.4898
    Number of Reflections(R-Free) 133
    Number of Reflections(R-Work) 2569
    R-Factor(R-Work) 0.162
    R-Factor(R-Free) 0.1974
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.4898
    Shell Resolution(Low) 2.5894
    Number of Reflections(R-Free) 135
    Number of Reflections(R-Work) 2584
    R-Factor(R-Work) 0.1676
    R-Factor(R-Free) 0.1942
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.5894
    Shell Resolution(Low) 2.7073
    Number of Reflections(R-Free) 137
    Number of Reflections(R-Work) 2585
    R-Factor(R-Work) 0.1686
    R-Factor(R-Free) 0.2007
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.7073
    Shell Resolution(Low) 2.85
    Number of Reflections(R-Free) 153
    Number of Reflections(R-Work) 2534
    R-Factor(R-Work) 0.1652
    R-Factor(R-Free) 0.1755
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.85
    Shell Resolution(Low) 3.0285
    Number of Reflections(R-Free) 121
    Number of Reflections(R-Work) 2649
    R-Factor(R-Work) 0.1662
    R-Factor(R-Free) 0.1956
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.0285
    Shell Resolution(Low) 3.2622
    Number of Reflections(R-Free) 145
    Number of Reflections(R-Work) 2616
    R-Factor(R-Work) 0.1718
    R-Factor(R-Free) 0.2053
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.2622
    Shell Resolution(Low) 3.5904
    Number of Reflections(R-Free) 138
    Number of Reflections(R-Work) 2661
    R-Factor(R-Work) 0.1703
    R-Factor(R-Free) 0.1954
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.5904
    Shell Resolution(Low) 4.1095
    Number of Reflections(R-Free) 152
    Number of Reflections(R-Work) 2657
    R-Factor(R-Work) 0.1608
    R-Factor(R-Free) 0.1866
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.1095
    Shell Resolution(Low) 5.1761
    Number of Reflections(R-Free) 151
    Number of Reflections(R-Work) 2691
    R-Factor(R-Work) 0.1663
    R-Factor(R-Free) 0.1693
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 5.1761
    Shell Resolution(Low) 42.1599
    Number of Reflections(R-Free) 146
    Number of Reflections(R-Work) 2819
    R-Factor(R-Work) 0.2041
    R-Factor(R-Free) 0.2038
    Percent Reflections(Observed) 100.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_dihedral_angle_d 13.436
    f_plane_restr 0.004
    f_chiral_restr 0.055
    f_angle_d 0.789
    f_bond_d 0.004
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 3451
    Nucleic Acid Atoms 0
    Heterogen Atoms 14
    Solvent Atoms 276
     
     
  •   Software and Computing Hide
    Computing
    Data Collection Blu-Ice
    Data Reduction (intensity integration) XDS
    Data Reduction (data scaling) XSCALE
    Structure Refinement PHENIX (phenix.refine: 1.7_650)
     
    Software
    refinement PHENIX version: (phenix.refine: 1.7_650)
    data collection Blu-Ice