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X-RAY DIFFRACTION
Materials and Methods page
3UJO
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, SITTING DROP
    pH 8.5
    Temperature 289.0
    Details 30% PEG 4K, 100mM Tris pH 8.5, 200mM Na-acetate, VAPOR DIFFUSION, SITTING DROP, temperature 289K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 89.78 α = 90
    b = 89.78 β = 90
    c = 123.89 γ = 120
     
    Space Group
    Space Group Name:    P 32
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type MARMOSAIC 300 mm CCD
    Collection Date 2010-10-29
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type ESRF BEAMLINE BM14
    Wavelength List 0.97
    Site ESRF
    Beamline BM14
     
     
  •   Refinement Data Hide
    Reflection Details
    Resolution(High) 2
    Resolution(Low) 123.92
    Number Reflections(Observed) 75331
    Percent Possible(Observed) 99.8
    R Merge I(Observed) 0.106
    B(Isotropic) From Wilson Plot 26.7
    Redundancy 6.1
     
    High Resolution Shell Details
    Resolution(High) 2.0
    Resolution(Low) 2.11
    Percent Possible(All) 98.8
    R Merge I(Observed) 0.52
    Mean I Over Sigma(Observed) 2.4
    Redundancy 5.0
    Number Unique Reflections(All) 10855
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.0
    Resolution(Low) 42.2
    Number of Reflections(Observed) 71512
    Number of Reflections(R-Free) 3754
    Percent Reflections(Observed) 99.63
    R-Factor(Observed) 0.20966
    R-Work 0.2075
    R-Free 0.2495
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Isotropic Thermal Model Isotropic
    Mean Isotropic B Value 32.315
    Anisotropic B[1][1] -10.32
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] -10.32
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 20.64
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.999
    Shell Resolution(Low) 2.051
    Number of Reflections(R-Free) 302
    Number of Reflections(R-Work) 5039
    R-Factor(R-Work) 0.191
    R-Factor(R-Free) 0.276
    Percent Reflections(Observed) 96.03
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_scangle_it 0.547
    r_scbond_it 0.364
    r_mcangle_it 0.358
    r_mcbond_it 0.201
    r_gen_planes_refined 0.004
    r_chiral_restr 0.059
    r_dihedral_angle_4_deg 15.138
    r_dihedral_angle_3_deg 14.18
    r_dihedral_angle_2_deg 38.061
    r_dihedral_angle_1_deg 5.264
    r_angle_refined_deg 0.915
    r_bond_refined_d 0.006
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 7661
    Nucleic Acid Atoms 0
    Heterogen Atoms 130
    Solvent Atoms 158
     
     
  •   Software and Computing Hide
    Computing
    Data Collection HKL-2000
    Data Reduction (intensity integration) HKL-2000
    Data Reduction (data scaling) SCALA
    Structure Solution PHASER
    Structure Refinement REFMAC 5.5.0109
     
    Software
    refinement REFMAC version: 5.5.0109
    model building PHASER
    data collection HKL-2000