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X-RAY DIFFRACTION
Materials and Methods page
3UJ3
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 6.5
    Temperature 289.0
    Details 10% Ammonium Sulfate, 20% Ethylene Glycol, 10 mM MgSO4, 100 mM MES 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 289K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 116.84 α = 90
    b = 116.84 β = 90
    c = 117.64 γ = 120
     
    Space Group
    Space Group Name:    P 62 2 2
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
    Diffrn ID 2
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type ADSC QUANTUM 210r
    Collection Date 2006-05-18
    Detector CCD
    Type ADSC QUANTUM 315r
    Collection Date 2006-08-06
     
    Diffraction Radiation
    Monochromator GRAPHITE
    Diffraction Protocol SINGLE WAVELENGTH
    Monochromator GRAPHITE
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type ALS BEAMLINE 8.2.2
    Wavelength List 1.07210
    Site ALS
    Beamline 8.2.2
    Source SYNCHROTRON
    Type APS BEAMLINE 24-ID-C
    Wavelength List 0.97918
    Site APS
    Beamline 24-ID-C
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 3.0
    Observed Criterion Sigma(I) 3.0
    Resolution(High) 3.5
    Resolution(Low) 30
    Number Reflections(All) 6206
    Number Reflections(Observed) 6313
    Percent Possible(Observed) 99.0
    Redundancy 5.7
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method SIRAS
    reflnsShellList 3.51
    Resolution(Low) 46.48
    Number of Reflections(Observed) 5824
    Number of Reflections(R-Free) 375
    Percent Reflections(Observed) 97.92
    R-Factor(Observed) 0.25894
    R-Work 0.2568
    R-Free 0.28918
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 146.395
    Anisotropic B[1][1] -13.08
    Anisotropic B[1][2] -6.54
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] -13.08
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 19.63
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.514
    Shell Resolution(Low) 3.606
    Number of Reflections(R-Free) 29
    Number of Reflections(R-Work) 343
    R-Factor(R-Work) 0.395
    R-Factor(R-Free) 0.458
    Percent Reflections(Observed) 97.38
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_sphericity_bonded 82.521
    r_rigid_bond_restr 1.408
    r_gen_planes_refined 0.003
    r_chiral_restr 0.075
    r_dihedral_angle_4_deg 13.221
    r_dihedral_angle_3_deg 22.316
    r_dihedral_angle_2_deg 33.388
    r_dihedral_angle_1_deg 5.107
    r_angle_refined_deg 0.988
    r_bond_refined_d 0.006
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 984
    Nucleic Acid Atoms 0
    Heterogen Atoms 0
    Solvent Atoms 0
     
     
  •   Software and Computing Hide
    Computing
    Data Collection ADSC Quantum
    Data Reduction (intensity integration) XDS
    Data Reduction (data scaling) XDS
    Structure Solution SOLVE
    Structure Refinement REFMAC 5.6.0117
     
    Software
    refinement REFMAC version: 5.6.0117
    model building SOLVE
    data collection ADSC version: Quantum