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X-RAY DIFFRACTION
Materials and Methods page
3UGI
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 7.2
    Temperature 293.0
    Details 20% PEG 3350 in 0.2 M ammonium sulfate and 25 mM HEPES pH 7.2. , VAPOR DIFFUSION, HANGING DROP, temperature 293K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 43.53 α = 90
    b = 32.46 β = 94.55
    c = 49.59 γ = 90
     
    Space Group
    Space Group Name:    P 1 21 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type ADSC QUANTUM 210
    Collection Date 2004-04-27
     
    Diffraction Radiation
    Monochromator SI(111) CHANNEL CULT MONOCHROMATER
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type NSLS BEAMLINE X6A
    Wavelength List 1.0
    Site NSLS
    Beamline X6A
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 4.0
    Observed Criterion Sigma(I) 2.0
    Resolution(High) 1.3
    Resolution(Low) 10
    Number Reflections(All) 29849
    Number Reflections(Observed) 27793
    Percent Possible(Observed) 93.06
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 1.361
    Resolution(Low) 9.977
    Cut-off Sigma(F) 0.04
    Number of Reflections(all) 27793
    Number of Reflections(Observed) 27793
    Number of Reflections(R-Free) 1990
    Percent Reflections(Observed) 93.06
    R-Factor(All) 0.1547
    R-Factor(Observed) 0.1547
    R-Work 0.1525
    R-Free 0.1824
    R-Free Selection Details 10%
     
    Temperature Factor Modeling
    Anisotropic B[1][1] 3.6706
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 4.7826
    Anisotropic B[2][2] -6.0619
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 2.3913
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.361
    Shell Resolution(Low) 1.3945
    Number of Reflections(R-Free) 108
    Number of Reflections(R-Work) 1437
    R-Factor(R-Work) 0.2308
    R-Factor(R-Free) 0.2661
    Percent Reflections(Observed) 74.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.3945
    Shell Resolution(Low) 1.4321
    Number of Reflections(R-Free) 124
    Number of Reflections(R-Work) 1650
    R-Factor(R-Work) 0.1933
    R-Factor(R-Free) 0.2494
    Percent Reflections(Observed) 84.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.4321
    Shell Resolution(Low) 1.4741
    Number of Reflections(R-Free) 130
    Number of Reflections(R-Work) 1716
    R-Factor(R-Work) 0.1625
    R-Factor(R-Free) 0.2302
    Percent Reflections(Observed) 87.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.4741
    Shell Resolution(Low) 1.5215
    Number of Reflections(R-Free) 120
    Number of Reflections(R-Work) 1777
    R-Factor(R-Work) 0.1392
    R-Factor(R-Free) 0.167
    Percent Reflections(Observed) 90.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.5215
    Shell Resolution(Low) 1.5757
    Number of Reflections(R-Free) 144
    Number of Reflections(R-Work) 1766
    R-Factor(R-Work) 0.129
    R-Factor(R-Free) 0.1905
    Percent Reflections(Observed) 91.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.5757
    Shell Resolution(Low) 1.6385
    Number of Reflections(R-Free) 154
    Number of Reflections(R-Work) 1831
    R-Factor(R-Work) 0.1214
    R-Factor(R-Free) 0.1295
    Percent Reflections(Observed) 93.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.6385
    Shell Resolution(Low) 1.7128
    Number of Reflections(R-Free) 147
    Number of Reflections(R-Work) 1888
    R-Factor(R-Work) 0.1129
    R-Factor(R-Free) 0.1638
    Percent Reflections(Observed) 95.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.7128
    Shell Resolution(Low) 1.8026
    Number of Reflections(R-Free) 152
    Number of Reflections(R-Work) 1896
    R-Factor(R-Work) 0.1158
    R-Factor(R-Free) 0.1418
    Percent Reflections(Observed) 96.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.8026
    Shell Resolution(Low) 1.9148
    Number of Reflections(R-Free) 144
    Number of Reflections(R-Work) 1908
    R-Factor(R-Work) 0.1225
    R-Factor(R-Free) 0.1589
    Percent Reflections(Observed) 97.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.9148
    Shell Resolution(Low) 2.0614
    Number of Reflections(R-Free) 151
    Number of Reflections(R-Work) 1942
    R-Factor(R-Work) 0.1365
    R-Factor(R-Free) 0.1667
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.0614
    Shell Resolution(Low) 2.2666
    Number of Reflections(R-Free) 152
    Number of Reflections(R-Work) 1974
    R-Factor(R-Work) 0.1452
    R-Factor(R-Free) 0.1893
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.2666
    Shell Resolution(Low) 2.5896
    Number of Reflections(R-Free) 150
    Number of Reflections(R-Work) 1972
    R-Factor(R-Work) 0.1517
    R-Factor(R-Free) 0.1723
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.5896
    Shell Resolution(Low) 3.2439
    Number of Reflections(R-Free) 160
    Number of Reflections(R-Work) 1993
    R-Factor(R-Work) 0.1753
    R-Factor(R-Free) 0.2045
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.2439
    Shell Resolution(Low) 9.9771
    Number of Reflections(R-Free) 154
    Number of Reflections(R-Work) 2053
    R-Factor(R-Work) 0.173
    R-Factor(R-Free) 0.1915
    Percent Reflections(Observed) 100.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_plane_restr 0.005
    f_chiral_restr 0.074
    f_dihedral_angle_d 20.948
    f_angle_d 1.093
    f_bond_d 0.006
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 1023
    Nucleic Acid Atoms 0
    Heterogen Atoms 46
    Solvent Atoms 196
     
     
  •   Software and Computing Hide
    Computing
    Data Collection ADSC Quantum
    Data Reduction (intensity integration) HKL-2000
    Data Reduction (data scaling) SCALEPACK
    Structure Solution AutoMR
    Structure Refinement PHENIX (phenix.refine: 1.7_650)
     
    Software
    refinement PHENIX version: (phenix.refine: 1.7_650)
    model building AutoMR
    data collection ADSC version: Quantum