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X-RAY DIFFRACTION
Materials and Methods page
3UGD
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 7.2
    Temperature 293.0
    Details 20% PEG 3350 in 0.2 M ammonium sulfate and 25 mM HEPES pH 7.2. , VAPOR DIFFUSION, HANGING DROP, temperature 293K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 43.95 α = 90
    b = 32.5 β = 94.21
    c = 49.68 γ = 90
     
    Space Group
    Space Group Name:    P 1 21 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type ADSC QUANTUM 210
    Collection Date 2004-04-27
     
    Diffraction Radiation
    Monochromator SI(111) CHANNEL CULT MONOCHROMATER
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type NSLS BEAMLINE X6A
    Wavelength List 1.0
    Site NSLS
    Beamline X6A
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 4.0
    Observed Criterion Sigma(I) 2.0
    Resolution(High) 1.45
    Resolution(Low) 10
    Number Reflections(All) 24847
    Number Reflections(Observed) 23591
    Percent Possible(Observed) 99.4
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 1.45
    Resolution(Low) 9.956
    Cut-off Sigma(F) 0.02
    Number of Reflections(all) 24847
    Number of Reflections(Observed) 22542
    Number of Reflections(R-Free) 1987
    Percent Reflections(Observed) 90.02
    R-Factor(All) 0.1766
    R-Factor(Observed) 0.1766
    R-Work 0.1727
    R-Free 0.2177
    R-Free Selection Details 10%
     
    Temperature Factor Modeling
    Anisotropic B[1][1] 0.7679
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] -0.7007
    Anisotropic B[2][2] -1.4185
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 0.6505
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.45
    Shell Resolution(Low) 1.4862
    Number of Reflections(R-Free) 135
    Number of Reflections(R-Work) 1296
    R-Factor(R-Work) 0.2151
    R-Factor(R-Free) 0.2576
    Percent Reflections(Observed) 80.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.4862
    Shell Resolution(Low) 1.5262
    Number of Reflections(R-Free) 137
    Number of Reflections(R-Work) 1323
    R-Factor(R-Work) 0.1884
    R-Factor(R-Free) 0.2325
    Percent Reflections(Observed) 83.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.5262
    Shell Resolution(Low) 1.5709
    Number of Reflections(R-Free) 119
    Number of Reflections(R-Work) 1412
    R-Factor(R-Work) 0.1722
    R-Factor(R-Free) 0.2375
    Percent Reflections(Observed) 86.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.5709
    Shell Resolution(Low) 1.6214
    Number of Reflections(R-Free) 140
    Number of Reflections(R-Work) 1437
    R-Factor(R-Work) 0.1618
    R-Factor(R-Free) 0.2159
    Percent Reflections(Observed) 89.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.6214
    Shell Resolution(Low) 1.6791
    Number of Reflections(R-Free) 150
    Number of Reflections(R-Work) 1461
    R-Factor(R-Work) 0.1538
    R-Factor(R-Free) 0.1921
    Percent Reflections(Observed) 91.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.6791
    Shell Resolution(Low) 1.746
    Number of Reflections(R-Free) 135
    Number of Reflections(R-Work) 1489
    R-Factor(R-Work) 0.147
    R-Factor(R-Free) 0.2084
    Percent Reflections(Observed) 91.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.746
    Shell Resolution(Low) 1.825
    Number of Reflections(R-Free) 136
    Number of Reflections(R-Work) 1381
    R-Factor(R-Work) 0.1506
    R-Factor(R-Free) 0.1943
    Percent Reflections(Observed) 85.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.825
    Shell Resolution(Low) 1.9206
    Number of Reflections(R-Free) 134
    Number of Reflections(R-Work) 1375
    R-Factor(R-Work) 0.1528
    R-Factor(R-Free) 0.2206
    Percent Reflections(Observed) 85.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.9206
    Shell Resolution(Low) 2.04
    Number of Reflections(R-Free) 142
    Number of Reflections(R-Work) 1565
    R-Factor(R-Work) 0.161
    R-Factor(R-Free) 0.1801
    Percent Reflections(Observed) 96.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.04
    Shell Resolution(Low) 2.1959
    Number of Reflections(R-Free) 164
    Number of Reflections(R-Work) 1619
    R-Factor(R-Work) 0.1774
    R-Factor(R-Free) 0.2191
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.1959
    Shell Resolution(Low) 2.414
    Number of Reflections(R-Free) 150
    Number of Reflections(R-Work) 1537
    R-Factor(R-Work) 0.161
    R-Factor(R-Free) 0.2305
    Percent Reflections(Observed) 95.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.414
    Shell Resolution(Low) 2.7568
    Number of Reflections(R-Free) 144
    Number of Reflections(R-Work) 1521
    R-Factor(R-Work) 0.1835
    R-Factor(R-Free) 0.2354
    Percent Reflections(Observed) 91.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.7568
    Shell Resolution(Low) 3.4492
    Number of Reflections(R-Free) 141
    Number of Reflections(R-Work) 1538
    R-Factor(R-Work) 0.1889
    R-Factor(R-Free) 0.2216
    Percent Reflections(Observed) 93.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.4492
    Shell Resolution(Low) 9.9561
    Number of Reflections(R-Free) 160
    Number of Reflections(R-Work) 1601
    R-Factor(R-Work) 0.1788
    R-Factor(R-Free) 0.2167
    Percent Reflections(Observed) 95.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_plane_restr 0.004
    f_chiral_restr 0.072
    f_dihedral_angle_d 13.875
    f_angle_d 1.123
    f_bond_d 0.006
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 1018
    Nucleic Acid Atoms 0
    Heterogen Atoms 42
    Solvent Atoms 185
     
     
  •   Software and Computing Hide
    Computing
    Data Collection ADSC Quantum
    Data Reduction (intensity integration) HKL-2000
    Data Reduction (data scaling) SCALEPACK
    Structure Solution AutoMR
    Structure Refinement PHENIX (phenix.refine: 1.7_650)
     
    Software
    refinement PHENIX version: (phenix.refine: 1.7_650)
    model building AutoMR
    data collection ADSC version: Quantum