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X-RAY DIFFRACTION
Materials and Methods page
3UCF
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, SITTING DROP
    pH 6.5
    Temperature 293.0
    Details 0.2 M ammonium acetate, 10% PEG 3350, 0.2 M BIS-TRIS pH 6.5, Protein concentration: 8 mg/mL, VAPOR DIFFUSION, SITTING DROP, temperature 293K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 59.36 α = 90
    b = 122.89 β = 111.09
    c = 63.14 γ = 90
     
    Space Group
    Space Group Name:    P 1 21 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type ADSC QUANTUM 315r
    Collection Date 2011-06-12
     
    Diffraction Radiation
    Monochromator channel cut cryogenically cooled monochromator crystal
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type SOLEIL BEAMLINE PROXIMA 1
    Wavelength List 0.98011
    Site SOLEIL
    Beamline PROXIMA 1
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma(I) -3.0
    Resolution(High) 2.35
    Resolution(Low) 45
    Number Reflections(All) 35379
    Number Reflections(Observed) 34318
    Percent Possible(Observed) 97.0
    R Merge I(Observed) 0.182
    B(Isotropic) From Wilson Plot 29.17
    Redundancy 3.72
     
    High Resolution Shell Details
    Resolution(High) 2.35
    Resolution(Low) 2.49
    Percent Possible(All) 94.3
    R Merge I(Observed) 0.709
    Mean I Over Sigma(Observed) 2.74
    Redundancy 3.56
    Number Unique Reflections(All) 5671
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.347
    Resolution(Low) 42.524
    Cut-off Sigma(F) 2.0
    Number of Reflections(all) 35379
    Number of Reflections(Observed) 34312
    Number of Reflections(R-Free) 1712
    Percent Reflections(Observed) 97.26
    R-Factor(Observed) 0.1823
    R-Work 0.1808
    R-Free 0.2099
    R-Free Selection Details Random
     
    Temperature Factor Modeling
    Isotropic Thermal Model isotropic - 1 B-factor per atom
    Mean Isotropic B Value 36.63
    Anisotropic B[1][1] -3.7327
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] -5.9908
    Anisotropic B[2][2] 4.0418
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -0.3091
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.3471
    Shell Resolution(Low) 2.4161
    Number of Reflections(R-Free) 133
    Number of Reflections(R-Work) 2594
    R-Factor(R-Work) 0.2495
    R-Factor(R-Free) 0.2879
    Percent Reflections(Observed) 94.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.4161
    Shell Resolution(Low) 2.4941
    Number of Reflections(R-Free) 140
    Number of Reflections(R-Work) 2656
    R-Factor(R-Work) 0.2271
    R-Factor(R-Free) 0.2936
    Percent Reflections(Observed) 96.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.4941
    Shell Resolution(Low) 2.5832
    Number of Reflections(R-Free) 143
    Number of Reflections(R-Work) 2715
    R-Factor(R-Work) 0.2152
    R-Factor(R-Free) 0.2573
    Percent Reflections(Observed) 97.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.5832
    Shell Resolution(Low) 2.6866
    Number of Reflections(R-Free) 142
    Number of Reflections(R-Work) 2689
    R-Factor(R-Work) 0.1961
    R-Factor(R-Free) 0.2429
    Percent Reflections(Observed) 97.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.6866
    Shell Resolution(Low) 2.8089
    Number of Reflections(R-Free) 144
    Number of Reflections(R-Work) 2734
    R-Factor(R-Work) 0.2008
    R-Factor(R-Free) 0.2385
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.8089
    Shell Resolution(Low) 2.957
    Number of Reflections(R-Free) 143
    Number of Reflections(R-Work) 2723
    R-Factor(R-Work) 0.191
    R-Factor(R-Free) 0.219
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.957
    Shell Resolution(Low) 3.1422
    Number of Reflections(R-Free) 144
    Number of Reflections(R-Work) 2733
    R-Factor(R-Work) 0.1851
    R-Factor(R-Free) 0.2294
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.1422
    Shell Resolution(Low) 3.3847
    Number of Reflections(R-Free) 143
    Number of Reflections(R-Work) 2714
    R-Factor(R-Work) 0.1883
    R-Factor(R-Free) 0.2095
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.3847
    Shell Resolution(Low) 3.7251
    Number of Reflections(R-Free) 145
    Number of Reflections(R-Work) 2756
    R-Factor(R-Work) 0.1691
    R-Factor(R-Free) 0.2093
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.7251
    Shell Resolution(Low) 4.2637
    Number of Reflections(R-Free) 144
    Number of Reflections(R-Work) 2751
    R-Factor(R-Work) 0.1514
    R-Factor(R-Free) 0.1698
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.2637
    Shell Resolution(Low) 5.3701
    Number of Reflections(R-Free) 145
    Number of Reflections(R-Work) 2754
    R-Factor(R-Work) 0.1492
    R-Factor(R-Free) 0.1659
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 5.3701
    Shell Resolution(Low) 42.5308
    Number of Reflections(R-Free) 146
    Number of Reflections(R-Work) 2781
    R-Factor(R-Work) 0.1827
    R-Factor(R-Free) 0.1968
    Percent Reflections(Observed) 98.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_plane_restr 0.002
    f_chiral_restr 0.038
    f_dihedral_angle_d 13.316
    f_angle_d 0.667
    f_bond_d 0.002
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 5615
    Nucleic Acid Atoms 0
    Heterogen Atoms 0
    Solvent Atoms 273
     
     
  •   Software and Computing Hide
    Computing
    Data Collection ADSC Quantum
    Data Reduction (intensity integration) XDS
    Data Reduction (data scaling) XDS
    Structure Solution Phaser
    Structure Refinement PHENIX (phenix.refine: 1.7.1_743)
     
    Software
    refinement PHENIX version: (phenix.refine: 1.7.1_743)
    model building Phaser
    data collection ADSC version: Quantum