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X-RAY DIFFRACTION
Materials and Methods page
3U4H
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 6
    Temperature 298.0
    Details 100mM MES, 12% PEG 4000, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 41.71 α = 72.85
    b = 51.46 β = 89.13
    c = 67.75 γ = 83.18
     
    Space Group
    Space Group Name:    P 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type ADSC QUANTUM 210
    Collection Date 2006-10-04
     
    Diffraction Radiation
    Monochromator Si 111 CHANNEL
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type CHESS BEAMLINE A1
    Wavelength List 0.9778
    Site CHESS
    Beamline A1
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 0.0
    Observed Criterion Sigma(I) 0.0
    Resolution(High) 1.87
    Resolution(Low) 50
    Number Reflections(All) 38912
    Number Reflections(Observed) 38912
    Percent Possible(Observed) 90.5
     
    High Resolution Shell Details
    Resolution(High) 1.87
    Resolution(Low) 1.94
    Percent Possible(All) 64.3
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 1.878
    Resolution(Low) 25.246
    Cut-off Sigma(F) 1.97
    Number of Reflections(all) 38873
    Number of Reflections(Observed) 38873
    Number of Reflections(R-Free) 1948
    Percent Reflections(Observed) 89.1
    R-Factor(All) 0.1886
    R-Factor(Observed) 0.1886
    R-Work 0.1858
    R-Free 0.2416
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 47.2435
    Anisotropic B[1][1] -9.9843
    Anisotropic B[1][2] -0.2757
    Anisotropic B[1][3] 1.571
    Anisotropic B[2][2] -0.7623
    Anisotropic B[2][3] -7.141
    Anisotropic B[3][3] 10.7467
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.8777
    Shell Resolution(Low) 1.9246
    Number of Reflections(R-Free) 83
    Number of Reflections(R-Work) 1391
    R-Factor(R-Work) 0.2478
    R-Factor(R-Free) 0.3575
    Percent Reflections(Observed) 47.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.9246
    Shell Resolution(Low) 1.9766
    Number of Reflections(R-Free) 100
    Number of Reflections(R-Work) 2058
    R-Factor(R-Work) 0.2244
    R-Factor(R-Free) 0.2748
    Percent Reflections(Observed) 69.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.9766
    Shell Resolution(Low) 2.0348
    Number of Reflections(R-Free) 115
    Number of Reflections(R-Work) 2259
    R-Factor(R-Work) 0.2128
    R-Factor(R-Free) 0.3083
    Percent Reflections(Observed) 77.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.0348
    Shell Resolution(Low) 2.1004
    Number of Reflections(R-Free) 132
    Number of Reflections(R-Work) 2461
    R-Factor(R-Work) 0.2143
    R-Factor(R-Free) 0.2716
    Percent Reflections(Observed) 83.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.1004
    Shell Resolution(Low) 2.1755
    Number of Reflections(R-Free) 133
    Number of Reflections(R-Work) 2684
    R-Factor(R-Work) 0.1984
    R-Factor(R-Free) 0.2618
    Percent Reflections(Observed) 90.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.1755
    Shell Resolution(Low) 2.2625
    Number of Reflections(R-Free) 153
    Number of Reflections(R-Work) 2780
    R-Factor(R-Work) 0.194
    R-Factor(R-Free) 0.2492
    Percent Reflections(Observed) 94.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.2625
    Shell Resolution(Low) 2.3654
    Number of Reflections(R-Free) 133
    Number of Reflections(R-Work) 2864
    R-Factor(R-Work) 0.1926
    R-Factor(R-Free) 0.2515
    Percent Reflections(Observed) 97.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.3654
    Shell Resolution(Low) 2.49
    Number of Reflections(R-Free) 173
    Number of Reflections(R-Work) 2902
    R-Factor(R-Work) 0.1879
    R-Factor(R-Free) 0.2603
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.49
    Shell Resolution(Low) 2.6459
    Number of Reflections(R-Free) 157
    Number of Reflections(R-Work) 2877
    R-Factor(R-Work) 0.1817
    R-Factor(R-Free) 0.2115
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.6459
    Shell Resolution(Low) 2.8499
    Number of Reflections(R-Free) 144
    Number of Reflections(R-Work) 2939
    R-Factor(R-Work) 0.188
    R-Factor(R-Free) 0.2762
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.8499
    Shell Resolution(Low) 3.1362
    Number of Reflections(R-Free) 151
    Number of Reflections(R-Work) 2913
    R-Factor(R-Work) 0.1845
    R-Factor(R-Free) 0.2629
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.1362
    Shell Resolution(Low) 3.5889
    Number of Reflections(R-Free) 168
    Number of Reflections(R-Work) 2914
    R-Factor(R-Work) 0.1742
    R-Factor(R-Free) 0.2071
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.5889
    Shell Resolution(Low) 4.5174
    Number of Reflections(R-Free) 157
    Number of Reflections(R-Work) 2939
    R-Factor(R-Work) 0.1551
    R-Factor(R-Free) 0.1972
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.5174
    Shell Resolution(Low) 25.2479
    Number of Reflections(R-Free) 149
    Number of Reflections(R-Work) 2944
    R-Factor(R-Work) 0.1797
    R-Factor(R-Free) 0.2303
    Percent Reflections(Observed) 99.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_dihedral_angle_d 20.902
    f_plane_restr 0.004
    f_chiral_restr 0.072
    f_angle_d 1.125
    f_bond_d 0.007
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 4032
    Nucleic Acid Atoms 0
    Heterogen Atoms 72
    Solvent Atoms 251
     
     
  •   Software and Computing Hide
    Computing
    Data Collection ADSC Quantum
    Data Reduction (intensity integration) HKL-2000
    Data Reduction (data scaling) HKL-2000
    Structure Solution MOLREP
    Structure Refinement PHENIX (phenix.refine: 1.6_289)
     
    Software
    refinement PHENIX version: (phenix.refine: 1.6_289)
    model building MOLREP
    data collection ADSC version: Quantum