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X-RAY DIFFRACTION
Materials and Methods page
3U45
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 8
    Temperature 298.0
    Details 1.4 M Sodium Citrate 50 mM Tris pH 8, VAPOR DIFFUSION, HANGING DROP, temperature 298K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 42.25 α = 90
    b = 41.59 β = 104.44
    c = 72.26 γ = 90
     
    Space Group
    Space Group Name:    P 1 21 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector IMAGE PLATE
    Type RIGAKU RAXIS IV++
    Details mirrors
    Collection Date 2011-06-06
     
    Diffraction Radiation
    Monochromator rigaku varimax HR
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source ROTATING ANODE
    Type RIGAKU RUH3R
    Wavelength List 1.5418
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 1.0
    Observed Criterion Sigma(I) 2.0
    Resolution(High) 1.7
    Resolution(Low) 50
    Number Reflections(All) 25852
    Number Reflections(Observed) 25901
    Percent Possible(Observed) 96.7
    Redundancy 3.3
     
    High Resolution Shell Details
    Resolution(High) 1.7
    Resolution(Low) 1.76
    Percent Possible(All) 98.1
    R Merge I(Observed) 0.094
    Redundancy 3.2
    Number Unique Reflections(All) 2618
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 1.699
    Resolution(Low) 23.819
    Cut-off Sigma(F) 0.0
    Number of Reflections(all) 26105
    Number of Reflections(Observed) 25901
    Number of Reflections(R-Free) 1984
    Percent Reflections(Observed) 95.81
    R-Factor(All) 0.17
    R-Factor(Observed) 0.174
    R-Work 0.1594
    R-Free 0.1914
    R-Free Selection Details random
     
    Temperature Factor Modeling
    Mean Isotropic B Value 16.4338
    Anisotropic B[1][1] -1.1389
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] -0.0705
    Anisotropic B[2][2] 1.8739
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -0.735
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.6992
    Shell Resolution(Low) 1.7417
    Number of Reflections(R-Free) 142
    Number of Reflections(R-Work) 1657
    R-Factor(R-Work) 0.2084
    R-Factor(R-Free) 0.248
    Percent Reflections(Observed) 94.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.7417
    Shell Resolution(Low) 1.7887
    Number of Reflections(R-Free) 137
    Number of Reflections(R-Work) 1665
    R-Factor(R-Work) 0.1887
    R-Factor(R-Free) 0.2578
    Percent Reflections(Observed) 96.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.7887
    Shell Resolution(Low) 1.8414
    Number of Reflections(R-Free) 143
    Number of Reflections(R-Work) 1700
    R-Factor(R-Work) 0.1651
    R-Factor(R-Free) 0.2056
    Percent Reflections(Observed) 96.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.8414
    Shell Resolution(Low) 1.9008
    Number of Reflections(R-Free) 144
    Number of Reflections(R-Work) 1675
    R-Factor(R-Work) 0.1533
    R-Factor(R-Free) 0.1884
    Percent Reflections(Observed) 94.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.9008
    Shell Resolution(Low) 1.9687
    Number of Reflections(R-Free) 136
    Number of Reflections(R-Work) 1678
    R-Factor(R-Work) 0.1487
    R-Factor(R-Free) 0.1842
    Percent Reflections(Observed) 95.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.9687
    Shell Resolution(Low) 2.0475
    Number of Reflections(R-Free) 141
    Number of Reflections(R-Work) 1704
    R-Factor(R-Work) 0.1497
    R-Factor(R-Free) 0.1785
    Percent Reflections(Observed) 96.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.0475
    Shell Resolution(Low) 2.1406
    Number of Reflections(R-Free) 151
    Number of Reflections(R-Work) 1718
    R-Factor(R-Work) 0.152
    R-Factor(R-Free) 0.1818
    Percent Reflections(Observed) 97.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.1406
    Shell Resolution(Low) 2.2534
    Number of Reflections(R-Free) 139
    Number of Reflections(R-Work) 1742
    R-Factor(R-Work) 0.1554
    R-Factor(R-Free) 0.209
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.2534
    Shell Resolution(Low) 2.3944
    Number of Reflections(R-Free) 143
    Number of Reflections(R-Work) 1751
    R-Factor(R-Work) 0.1608
    R-Factor(R-Free) 0.2085
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.3944
    Shell Resolution(Low) 2.5791
    Number of Reflections(R-Free) 146
    Number of Reflections(R-Work) 1786
    R-Factor(R-Work) 0.1725
    R-Factor(R-Free) 0.2037
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.5791
    Shell Resolution(Low) 2.8382
    Number of Reflections(R-Free) 152
    Number of Reflections(R-Work) 1783
    R-Factor(R-Work) 0.1715
    R-Factor(R-Free) 0.2019
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.8382
    Shell Resolution(Low) 3.2481
    Number of Reflections(R-Free) 147
    Number of Reflections(R-Work) 1790
    R-Factor(R-Work) 0.1666
    R-Factor(R-Free) 0.2115
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.2481
    Shell Resolution(Low) 4.0889
    Number of Reflections(R-Free) 115
    Number of Reflections(R-Work) 1403
    R-Factor(R-Work) 0.1434
    R-Factor(R-Free) 0.1634
    Percent Reflections(Observed) 78.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.0889
    Shell Resolution(Low) 23.8217
    Number of Reflections(R-Free) 153
    Number of Reflections(R-Work) 1860
    R-Factor(R-Work) 0.1506
    R-Factor(R-Free) 0.1601
    Percent Reflections(Observed) 100.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_dihedral_angle_d 12.319
    f_plane_restr 0.005
    f_chiral_restr 0.079
    f_angle_d 1.095
    f_bond_d 0.006
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 2047
    Nucleic Acid Atoms 0
    Heterogen Atoms 7
    Solvent Atoms 280
     
     
  •   Software and Computing Hide
    Computing
    Data Collection CrystalClear
    Data Reduction (intensity integration) HKL
    Data Reduction (data scaling) HKL
    Structure Solution PHENIX
    Structure Refinement PHENIX (phenix.refine: 1.7_650)
     
    Software
    data extraction pdb_extract version: 3.10
    refinement phenix
    data reduction HKL