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X-RAY DIFFRACTION
Materials and Methods page
3U1Q
  •   Crystallization Hide
    Crystallization Experiments
    Method hanging drop
    pH 7.5
    Temperature 298.0
    Details 0.1 M Hepes (pH 7.5), 1 M succinic Acid, 1% (w/v) PEG MME 2000, hanging drop, temperature 298K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 117.69 α = 90
    b = 121.01 β = 90
    c = 122.8 γ = 90
     
    Space Group
    Space Group Name:    I 21 21 21
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type RIGAKU SATURN 944+
    Collection Date 2009-01-01
     
    Diffraction Radiation
    Monochromator VARIMAX
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source rotating anode
    Type Cu Ka
    Wavelength List 1.5418
     
     
  •   Refinement Data Hide
    Reflection Details
    Resolution(High) 2.4
    Resolution(Low) 15.52
    Number Reflections(Observed) 34413
     
    High Resolution Shell Details
    Number Unique Reflections(All) 34413
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.4
    Resolution(Low) 15.52
    Cut-off Sigma(F) 0.0
    Number of Reflections(Observed) 34413
    Number of Reflections(R-Free) 1743
    Percent Reflections(Observed) 99.79
    R-Factor(Observed) 0.1884
    R-Work 0.1854
    R-Free 0.2442
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 36.5363
    Anisotropic B[1][1] 3.64
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] -1.24
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -2.39
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.4
    Shell Resolution(Low) 2.461
    Number of Reflections(R-Free) 131
    Number of Reflections(R-Work) 2355
    R-Factor(R-Work) 0.226
    R-Factor(R-Free) 0.312
    Percent Reflections(Observed) 99.92
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_scangle_it 5.543
    r_scbond_it 3.564
    r_mcangle_it 2.047
    r_mcbond_it 1.095
    r_gen_planes_refined 0.01
    r_chiral_restr 0.138
    r_dihedral_angle_4_deg 14.527
    r_dihedral_angle_3_deg 15.918
    r_dihedral_angle_2_deg 32.892
    r_dihedral_angle_1_deg 6.502
    r_angle_refined_deg 1.905
    r_bond_refined_d 0.023
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 3998
    Nucleic Acid Atoms 0
    Heterogen Atoms 58
    Solvent Atoms 223
     
     
  •   Software and Computing Hide
    Computing
    Structure Refinement REFMAC 5.5.0072
     
    Software
    data extraction pdb_extract version: 3.10
    refinement REFMAC5 version: 5.5.0072