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X-RAY DIFFRACTION
Materials and Methods page
3TZ8
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 6.5
    Temperature 293.0
    Details 10% PEG 20000, 15% glycerol, 100mM MES, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 42 α = 79.08
    b = 63.58 β = 87.69
    c = 74.51 γ = 89.88
     
    Space Group
    Space Group Name:    P 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 90
     
    Diffraction Detector
    Detector CCD
    Type MARRESEARCH
    Details Dynamically bendable mirror
    Collection Date 2009-01-30
     
    Diffraction Radiation
    Monochromator Si(111)
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type SLS BEAMLINE X10SA
    Wavelength List 0.977032
    Site SLS
    Beamline X10SA
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma(I) -3.0
    Resolution(High) 2.7
    Resolution(Low) 50
    Number Reflections(All) 20806
    Number Reflections(Observed) 20010
    Percent Possible(Observed) 96.2
    R Merge I(Observed) 0.048
    B(Isotropic) From Wilson Plot 33.979
    Redundancy 2.26
     
    High Resolution Shell Details
    Resolution(High) 2.7
    Resolution(Low) 2.8
    Percent Possible(All) 90.3
    R Merge I(Observed) 0.168
    Mean I Over Sigma(Observed) 5.07
    Redundancy 2.21
    Number Unique Reflections(All) 2188
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.7
    Resolution(Low) 41.96
    Number of Reflections(all) 20806
    Number of Reflections(Observed) 20008
    Number of Reflections(R-Free) 801
    Percent Reflections(Observed) 100.0
    R-Factor(Observed) 0.2004
    R-Work 0.198
    R-Free 0.2583
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 27.968
    Anisotropic B[1][1] 1.36
    Anisotropic B[1][2] 0.16
    Anisotropic B[1][3] -0.36
    Anisotropic B[2][2] -0.4
    Anisotropic B[2][3] 1.13
    Anisotropic B[3][3] -1.36
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.7
    Shell Resolution(Low) 2.77
    Number of Reflections(R-Free) 55
    Number of Reflections(R-Work) 1315
    R-Factor(R-Work) 0.269
    R-Factor(R-Free) 0.342
    Percent Reflections(Observed) 100.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_scangle_it 1.506
    r_scbond_it 0.879
    r_mcangle_it 0.775
    r_mcbond_it 0.433
    r_symmetry_hbond_refined 0.128
    r_bond_refined_d 0.008
    r_angle_refined_deg 1.136
    r_dihedral_angle_1_deg 5.285
    r_dihedral_angle_2_deg 37.667
    r_dihedral_angle_3_deg 16.524
    r_dihedral_angle_4_deg 18.463
    r_chiral_restr 0.072
    r_gen_planes_refined 0.003
    r_nbd_refined 0.193
    r_nbtor_refined 0.305
    r_xyhbond_nbd_refined 0.132
    r_symmetry_vdw_refined 0.212
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 4195
    Nucleic Acid Atoms 0
    Heterogen Atoms 98
    Solvent Atoms 80
     
     
  •   Software and Computing Hide
    Computing
    Data Collection SLS-Software
    Data Reduction (intensity integration) XDS
    Data Reduction (data scaling) XSCALE
    Structure Solution PHASER
    Structure Refinement REFMAC 5.2.0005
     
    Software
    data extraction pdb_extract version: 3.10
    refinement REFMAC5
    molecular replacement Phaser version: 1.3.1
    data reduction Xscale