POP-OUT | CLOSE
 
X-RAY DIFFRACTION
Materials and Methods page
3TZ7
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 6.5
    Temperature 293.0
    Details 10% PEG 20000, 15% glycerol, 100mM MES, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 42.55 α = 79.28
    b = 64.28 β = 87.38
    c = 75.4 γ = 90.2
     
    Space Group
    Space Group Name:    P 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector IMAGE PLATE
    Type MAR scanner 345 mm plate
    Details Osmic
    Collection Date 2009-05-21
     
    Diffraction Radiation
    Monochromator Multilayer Optic
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source ROTATING ANODE
    Type BRUKER AXS MICROSTAR
    Wavelength List 1.541700
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma(I) -3.0
    Resolution(High) 3.3
    Resolution(Low) 40
    Number Reflections(All) 11797
    Number Reflections(Observed) 11298
    Percent Possible(Observed) 95.8
    R Merge I(Observed) 0.063
    B(Isotropic) From Wilson Plot 18.547
    Redundancy 2.21
     
    High Resolution Shell Details
    Resolution(High) 3.3
    Resolution(Low) 3.4
    Percent Possible(All) 95.6
    R Merge I(Observed) 0.171
    Mean I Over Sigma(Observed) 5.64
    Redundancy 2.2
    Number Unique Reflections(All) 998
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 3.3
    Resolution(Low) 28.58
    Cut-off Sigma(F) 0.0
    Number of Reflections(Observed) 11296
    Number of Reflections(R-Free) 678
    Percent Reflections(Observed) 100.0
    R-Factor(Observed) 0.193
    R-Work 0.1889
    R-Free 0.2563
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 24.4479
    Anisotropic B[1][1] -0.71
    Anisotropic B[1][2] -0.22
    Anisotropic B[1][3] -0.18
    Anisotropic B[2][2] 0.16
    Anisotropic B[2][3] 0.54
    Anisotropic B[3][3] 0.36
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.3
    Shell Resolution(Low) 3.385
    Number of Reflections(R-Free) 49
    Number of Reflections(R-Work) 771
    R-Factor(R-Work) 0.276
    R-Factor(R-Free) 0.407
    Percent Reflections(Observed) 100.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_scangle_it 1.707
    r_scbond_it 0.941
    r_mcangle_it 0.867
    r_mcbond_it 0.456
    r_gen_planes_refined 0.005
    r_chiral_restr 0.08
    r_dihedral_angle_4_deg 15.646
    r_dihedral_angle_3_deg 19.03
    r_dihedral_angle_2_deg 38.328
    r_dihedral_angle_1_deg 5.541
    r_angle_refined_deg 1.224
    r_bond_refined_d 0.009
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 4190
    Nucleic Acid Atoms 0
    Heterogen Atoms 92
    Solvent Atoms 0
     
     
  •   Software and Computing Hide
    Computing
    Data Collection MAR345dtb
    Data Reduction (intensity integration) XDS
    Data Reduction (data scaling) XSCALE
    Structure Solution PHASER
    Structure Refinement REFMAC 5.5.0102
     
    Software
    data extraction pdb_extract version: 3.10
    refinement REFMAC5
    molecular replacement Phaser version: 1.3.1
    data reduction Xscale