X-RAY DIFFRACTION Experimental Data & Validation


Lost? View more X-Ray Crystallographic info.

Crystallization

Crystalization Experiments
Method Vapor Diffusion Sitting Drop
pH 7
Temperature 295.0
Details 0.2-0.25 M di-ammoinium tartrate and 20% (w/v) Polyethylene Glycol 3350, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 295K

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 63.99 α = 90
b = 94.38 β = 93.51
c = 75.31 γ = 90
Symmetry
Space Group P 1 21 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 130
Diffraction Detector
Detector Diffraction Type Details Collection Date
PIXEL DECTRIS PILATUS 6M See Beamline Documentation 2011-02-15
Diffraction Radiation
Monochromator Protocol
See Beamline Documentation SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON NSLS BEAMLINE X25 1.1 NSLS X25

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.4 50 99.1 -- -- -- -- 30993 n/a -- -3.0 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
SAD 2.4 44.33 -- 1.37 -- 33879 1728 96.7 -- 0.18 0.1776 0.2247 Random
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.4002 2.4708 -- 110 2078 0.2755 0.3344 -- 76.0
X Ray Diffraction 2.4708 2.5505 -- 129 2400 0.28 0.3519 -- 87.0
X Ray Diffraction 2.5505 2.6417 -- 120 2722 0.2758 0.3687 -- 98.0
X Ray Diffraction 2.6417 2.7474 -- 155 2755 0.2439 0.3244 -- 100.0
X Ray Diffraction 2.7474 2.8724 -- 162 2735 0.2322 0.2956 -- 100.0
X Ray Diffraction 2.8724 3.0238 -- 147 2778 0.2144 0.2815 -- 100.0
X Ray Diffraction 3.0238 3.2132 -- 138 2773 0.2011 0.2739 -- 100.0
X Ray Diffraction 3.2132 3.4613 -- 171 2742 0.1857 0.2153 -- 100.0
X Ray Diffraction 3.4613 3.8094 -- 143 2773 0.1598 0.2234 -- 100.0
X Ray Diffraction 3.8094 4.3602 -- 166 2760 0.1405 0.1776 -- 100.0
X Ray Diffraction 4.3602 5.4918 -- 149 2789 0.1358 0.1652 -- 100.0
X Ray Diffraction 5.4918 44.3377 -- 138 2846 0.1648 0.2042 -- 100.0
Temperature Factor Modeling
Temperature Factor Value
Anisotropic B[1][1] 4.1058
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 7.7062
Anisotropic B[2][2] 0.7172
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] -4.823
RMS Deviations
Key Refinement Restraint Deviation
f_plane_restr 0.003
f_chiral_restr 0.06
f_dihedral_angle_d 14.13
f_angle_d 1.102
f_bond_d 0.006
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 6100
Nucleic Acid Atoms 0
Heterogen Atoms 68
Solvent Atoms 213

Software

Computing
Computing Package Purpose
CBASS Data Collection
HKL-2000 Data Reduction (intensity integration)
HKL-2000 Data Reduction (data scaling)
PHENIX Structure Solution
PHENIX (phenix.refine: 1.7_650) Structure Refinement
Software
Software Name Purpose
PHENIX version: (phenix.refine: 1.7_650) refinement
PHENIX model building
CBASS data collection