X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
pH 6
Temperature 293.0
Details 0.1 M MES-NaOH pH 6.0, 2% (v/v) PEG 400, 2.5 M (NH4)2SO4, VAPOR DIFFUSION, HANGING DROP, temperature 293K

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 61.68 α = 90
b = 105.16 β = 90
c = 128.7 γ = 90
Symmetry
Space Group P 21 21 21

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC QUANTUM 315 -- 2009-12-11
Diffraction Radiation
Monochromator Protocol
Si (111) SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON APS BEAMLINE 24-ID-C 0.9791 APS 24-ID-C

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.55 50 99.6 0.059 -- -- 7.0 121902 121902 0.0 2.0 --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.55 1.61 98.6 0.723 -- 2.0 5.3 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.55 33.24 -- 0.29 121138 121138 6057 99.39 -- 0.182 0.1808 0.206 Random
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.55 1.5676 -- 191 3731 0.3424 0.3724 -- 97.0
X Ray Diffraction 1.5676 1.5861 -- 201 3779 0.3383 0.3539 -- 99.0
X Ray Diffraction 1.5861 1.6054 -- 204 3787 0.3305 0.3675 -- 100.0
X Ray Diffraction 1.6054 1.6257 -- 186 3854 0.3082 0.3497 -- 100.0
X Ray Diffraction 1.6257 1.6471 -- 195 3790 0.2763 0.2975 -- 100.0
X Ray Diffraction 1.6471 1.6697 -- 173 3862 0.2642 0.3002 -- 100.0
X Ray Diffraction 1.6697 1.6935 -- 230 3745 0.2563 0.2879 -- 100.0
X Ray Diffraction 1.6935 1.7188 -- 188 3825 0.2372 0.2643 -- 100.0
X Ray Diffraction 1.7188 1.7457 -- 200 3789 0.2275 0.2606 -- 100.0
X Ray Diffraction 1.7457 1.7743 -- 206 3811 0.2182 0.2519 -- 100.0
X Ray Diffraction 1.7743 1.8049 -- 201 3824 0.1997 0.2363 -- 100.0
X Ray Diffraction 1.8049 1.8377 -- 210 3804 0.1853 0.2263 -- 100.0
X Ray Diffraction 1.8377 1.873 -- 206 3823 0.1787 0.2021 -- 100.0
X Ray Diffraction 1.873 1.9113 -- 218 3810 0.1711 0.2026 -- 100.0
X Ray Diffraction 1.9113 1.9528 -- 220 3808 0.1693 0.1981 -- 100.0
X Ray Diffraction 1.9528 1.9982 -- 198 3839 0.1608 0.1993 -- 100.0
X Ray Diffraction 1.9982 2.0482 -- 204 3841 0.1606 0.1961 -- 100.0
X Ray Diffraction 2.0482 2.1036 -- 198 3827 0.1644 0.2017 -- 100.0
X Ray Diffraction 2.1036 2.1655 -- 187 3816 0.1716 0.1936 -- 100.0
X Ray Diffraction 2.1655 2.2353 -- 219 3840 0.1681 0.2038 -- 100.0
X Ray Diffraction 2.2353 2.3152 -- 207 3841 0.162 0.1997 -- 100.0
X Ray Diffraction 2.3152 2.4079 -- 198 3846 0.1608 0.1828 -- 100.0
X Ray Diffraction 2.4079 2.5174 -- 219 3852 0.1595 0.1862 -- 100.0
X Ray Diffraction 2.5174 2.6501 -- 199 3892 0.1675 0.1925 -- 100.0
X Ray Diffraction 2.6501 2.8161 -- 218 3877 0.1837 0.2221 -- 100.0
X Ray Diffraction 2.8161 3.0334 -- 201 3879 0.1793 0.1976 -- 100.0
X Ray Diffraction 3.0334 3.3384 -- 193 3911 0.1759 0.1759 -- 100.0
X Ray Diffraction 3.3384 3.8208 -- 195 3905 0.1548 0.1746 -- 99.0
X Ray Diffraction 3.8208 4.8115 -- 196 3865 0.1469 0.1661 -- 97.0
X Ray Diffraction 4.8115 33.2476 -- 196 4008 0.2153 0.2481 -- 96.0
Temperature Factor Modeling
Temperature Factor Value
Anisotropic B[1][1] -0.7252
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 0.0
Anisotropic B[2][2] -0.8245
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] 1.5497
RMS Deviations
Key Refinement Restraint Deviation
f_angle_d 0.975
f_chiral_restr 0.067
f_plane_restr 0.005
f_bond_d 0.006
f_dihedral_angle_d 14.215
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 5220
Nucleic Acid Atoms 0
Heterogen Atoms 83
Solvent Atoms 688

Software

Software
Software Name Purpose
ADSC data collection version: Quantum
PHASER phasing
PHENIX refinement version: (phenix.refine: 1.7.1_743)
HKL-2000 data reduction
HKL-2000 data scaling