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X-RAY DIFFRACTION
Materials and Methods page
3TVD
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 4.6
    Temperature 298.0
    Details 0.2M Ammonium acetate, 0.1M Sodium acetate (pH4.6), 30% Polyethylene glycol 4000, VAPOR DIFFUSION, HANGING DROP, temperature 298K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 80.81 α = 90
    b = 122.65 β = 90
    c = 91.28 γ = 90
     
    Space Group
    Space Group Name:    C 2 2 2
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type RIGAKU SATURN 944+
    Details mirrors
    Collection Date 2011-03-21
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source ROTATING ANODE
    Type RIGAKU MICROMAX-007 HF
    Wavelength List 1.5418
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 2.0
    Observed Criterion Sigma(I) 2.0
    Resolution(High) 2.99
    Resolution(Low) 29
    Number Reflections(All) 8595
    Number Reflections(Observed) 8595
    Percent Possible(Observed) 99.7
    Redundancy 4.9
     
    High Resolution Shell Details
    Resolution(High) 3.0
    Resolution(Low) 3.15
    Percent Possible(All) 99.0
    R-Sym I(Observed) 0.34
    Redundancy 4.9
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.989
    Resolution(Low) 14.999
    Cut-off Sigma(F) 0.0
    Number of Reflections(all) 8595
    Number of Reflections(Observed) 8595
    Number of Reflections(R-Free) 853
    Percent Reflections(Observed) 91.27
    R-Factor(All) 0.2284
    R-Factor(Observed) 0.2284
    R-Work 0.2226
    R-Free 0.2825
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Anisotropic B[1][1] -10.3504
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] -0.7651
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 11.1155
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.9895
    Shell Resolution(Low) 3.1751
    Number of Reflections(R-Free) 134
    Number of Reflections(R-Work) 1226
    R-Factor(R-Work) 0.2956
    R-Factor(R-Free) 0.3953
    Percent Reflections(Observed) 88.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.1751
    Shell Resolution(Low) 3.4176
    Number of Reflections(R-Free) 129
    Number of Reflections(R-Work) 1196
    R-Factor(R-Work) 0.2594
    R-Factor(R-Free) 0.3079
    Percent Reflections(Observed) 86.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.4176
    Shell Resolution(Low) 3.7566
    Number of Reflections(R-Free) 135
    Number of Reflections(R-Work) 1222
    R-Factor(R-Work) 0.2921
    R-Factor(R-Free) 0.3636
    Percent Reflections(Observed) 87.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.7566
    Shell Resolution(Low) 4.289
    Number of Reflections(R-Free) 140
    Number of Reflections(R-Work) 1266
    R-Factor(R-Work) 0.2052
    R-Factor(R-Free) 0.2776
    Percent Reflections(Observed) 90.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.289
    Shell Resolution(Low) 5.3624
    Number of Reflections(R-Free) 154
    Number of Reflections(R-Work) 1366
    R-Factor(R-Work) 0.172
    R-Factor(R-Free) 0.2346
    Percent Reflections(Observed) 96.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 5.3624
    Shell Resolution(Low) 14.9987
    Number of Reflections(R-Free) 161
    Number of Reflections(R-Work) 1466
    R-Factor(R-Work) 0.176
    R-Factor(R-Free) 0.1895
    Percent Reflections(Observed) 99.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_plane_restr 0.004
    f_chiral_restr 0.072
    f_dihedral_angle_d 19.426
    f_angle_d 1.13
    f_bond_d 0.009
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 2840
    Nucleic Acid Atoms 0
    Heterogen Atoms 66
    Solvent Atoms 34
     
     
  •   Software and Computing Hide
    Computing
    Data Collection HKL-2000
    Data Reduction (intensity integration) HKL-2000
    Data Reduction (data scaling) HKL-2000
    Structure Solution Phaser
    Structure Refinement PHENIX (phenix.refine: 1.7.1_743)
     
    Software
    refinement PHENIX version: (phenix.refine: 1.7.1_743)
    model building Phaser
    data collection HKL-2000