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X-RAY DIFFRACTION
Materials and Methods page
3TUR
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 7.5
    Temperature 298.0
    Details 0.1 M Hepes (pH 7.5), 1 M succinic Acid, 1% (w/v) PEG MME 2000, VAPOR DIFFUSION, HANGING DROP, temperature 298K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 119.13 α = 90
    b = 120.83 β = 90
    c = 122.85 γ = 90
     
    Space Group
    Space Group Name:    I 21 21 21
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type RIGAKU SATURN 944
    Collection Date 2009-01-01
     
    Diffraction Radiation
    Monochromator VARIMAX
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source ROTATING ANODE
    Type RIGAKU FR-E+ SUPERBRIGHT
    Wavelength List 1.5418
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) -3.0
    Observed Criterion Sigma(I) -3.0
    Resolution(High) 1.72
    Resolution(Low) 85.7
    Number Reflections(All) 89172
    Number Reflections(Observed) 84134
    Percent Possible(Observed) 94.3
    Redundancy 3.5
     
     
  •   Refinement Hide
    Refinement Statistics
    reflnsShellList 1.72
    Resolution(Low) 85.69
    Cut-off Sigma(F) 0.0
    Number of Reflections(R-Free) 4474
    Percent Reflections(Observed) 94.35
    R-Factor(All) 0.2004
    R-Factor(Observed) 0.2004
    R-Work 0.1985
    R-Free 0.2346
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 38.9314
    Anisotropic B[1][1] 2.07
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] -1.25
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -0.82
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.72
    Shell Resolution(Low) 1.765
    Number of Reflections(R-Free) 287
    Number of Reflections(R-Work) 5447
    R-Factor(R-Work) 0.302
    R-Factor(R-Free) 0.327
    Percent Reflections(Observed) 83.67
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_rigid_bond_restr 17.036
    r_bond_refined_d 0.031
    r_angle_refined_deg 2.595
    r_dihedral_angle_1_deg 6.476
    r_dihedral_angle_2_deg 30.761
    r_dihedral_angle_3_deg 14.788
    r_dihedral_angle_4_deg 20.403
    r_chiral_restr 0.201
    r_gen_planes_refined 0.013
    r_mcbond_it 1.566
    r_mcangle_it 2.593
    r_scbond_it 5.525
    r_scangle_it 8.657
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 4039
    Nucleic Acid Atoms 0
    Heterogen Atoms 71
    Solvent Atoms 470
     
     
  •   Software and Computing Hide
    Computing
    Data Collection HKL-2000
    Data Reduction (intensity integration) HKL
    Data Reduction (data scaling) SCALEPACK
    Structure Solution SHARP
    Structure Refinement REFMAC 5.5.0109
     
    Software
    data extraction pdb_extract version: 3.10
    refinement REFMAC5