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X-RAY DIFFRACTION
Materials and Methods page
3TPV
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 6.5
    Temperature 298.0
    Details MES, 25.5% PEG 5000 MME, 0.2 M ammonium sulphate, 15% glycerol, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 133.7 α = 90
    b = 133.7 β = 90
    c = 48.5 γ = 120
     
    Space Group
    Space Group Name:    P 65
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type ADSC QUANTUM 315r
    Collection Date 2009-12-12
     
    Diffraction Radiation
    Monochromator Double flat crystal, Si(111)
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type ALS BEAMLINE 8.3.1
    Wavelength List 1.0
    Site ALS
    Beamline 8.3.1
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 0.0
    Observed Criterion Sigma(I) 0.0
    Resolution(High) 2.3
    Resolution(Low) 67.2
    Number Reflections(All) 22100
    Number Reflections(Observed) 22078
    Percent Possible(Observed) 99.0
    B(Isotropic) From Wilson Plot 28.5
     
    High Resolution Shell Details
    Resolution(High) 2.3
    Resolution(Low) 2.37
    Percent Possible(All) 99.0
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.3
    Resolution(Low) 38.6
    Cut-off Sigma(F) 0.0
    Number of Reflections(all) 22100
    Number of Reflections(Observed) 22078
    Number of Reflections(R-Free) 2853
    Percent Reflections(Observed) 99.0
    R-Factor(All) 0.24
    R-Factor(Observed) 0.239
    R-Work 0.239
    R-Free 0.289
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Isotropic Thermal Model RESTRAINED
    Mean Isotropic B Value 45.5
    Anisotropic B[1][1] -4.31
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] -4.31
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 8.62
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.3
    Shell Resolution(Low) 2.44
    Number of Reflections(R-Free) 476
    Number of Reflections(R-Work) 3193
    R-Factor(R-Work) 0.331
    R-Factor(R-Free) 0.366
    R-Free Error 0.017
    Percent Reflections(Observed) 99.7
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    c_scangle_it 2.66
    c_scbond_it 1.85
    c_mcangle_it 2.49
    c_mcbond_it 1.47
    c_improper_angle_d 0.91
    c_dihedral_angle_d 24.0
    c_angle_deg 1.1
    c_bond_d 0.016
     
    Coordinate Error
    Luzzati ESD(Observed) 0.35
    Luzzati Sigma A(Observed) 0.33
    Luzzati Resolution Cutoff(Low) 5.0
    Luzzati ESD(R-Free Set) 0.41
    Luzzati Sigma A(R-Free Set) 0.41
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 3329
    Nucleic Acid Atoms 0
    Heterogen Atoms 15
    Solvent Atoms 156
     
     
  •   Software and Computing Hide
    Computing
    Data Collection ADSC Quantum
    Data Reduction (intensity integration) MOSFLM
    Data Reduction (data scaling) SCALA
    Structure Solution molrep
    Structure Refinement CNS 1.2
     
    Software
    refinement CNS version: 1.2
    model building molrep
    data collection ADSC version: Quantum