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X-RAY DIFFRACTION
Materials and Methods page
3TIH
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 7.5
    Temperature 293.0
    Details 10% PEG 3350, 10% iso-propanol, 0.2 M Ammonium citrate, VAPOR DIFFUSION, HANGING DROP, temperature 293K, pH 7.5
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 55.57 α = 90
    b = 197.21 β = 91.25
    c = 83.32 γ = 90
     
    Space Group
    Space Group Name:    P 1 21 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type MAR scanner 300 mm plate
    Collection Date 2010-10-14
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type APS BEAMLINE 22-ID
    Wavelength List 1
    Site APS
    Beamline 22-ID
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 0.0
    Observed Criterion Sigma(I) 0.0
    Resolution(High) 4
    Resolution(Low) 50
    Number Reflections(All) 15241
    Number Reflections(Observed) 12925
    Percent Possible(Observed) 84.8
    R Merge I(Observed) 0.151
    Redundancy 3.3
     
    High Resolution Shell Details
    Resolution(High) 4.0
    Resolution(Low) 4.14
    Percent Possible(All) 57.8
    R Merge I(Observed) 0.345
    Mean I Over Sigma(Observed) 2.1
    R-Sym I(Observed) 0.292
    Redundancy 2.5
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 4.0
    Resolution(Low) 46.695
    Cut-off Sigma(F) 1.34
    Number of Reflections(all) 15152
    Number of Reflections(Observed) 12826
    Number of Reflections(R-Free) 625
    Percent Reflections(Observed) 84.63
    R-Factor(Observed) 0.2844
    R-Work 0.2829
    R-Free 0.3122
     
    Temperature Factor Modeling
    Anisotropic B[1][1] 33.6059
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] -11.8867
    Anisotropic B[2][2] -42.7126
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -16.6852
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.0001
    Shell Resolution(Low) 4.4024
    Number of Reflections(R-Free) 107
    Number of Reflections(R-Work) 2314
    R-Factor(R-Work) 0.3225
    R-Factor(R-Free) 0.3665
    Percent Reflections(Observed) 64.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.4024
    Shell Resolution(Low) 5.0387
    Number of Reflections(R-Free) 147
    Number of Reflections(R-Work) 3026
    R-Factor(R-Work) 0.2641
    R-Factor(R-Free) 0.3166
    Percent Reflections(Observed) 84.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 5.0387
    Shell Resolution(Low) 6.3458
    Number of Reflections(R-Free) 174
    Number of Reflections(R-Work) 3259
    R-Factor(R-Work) 0.2966
    R-Factor(R-Free) 0.3301
    Percent Reflections(Observed) 91.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 6.3458
    Shell Resolution(Low) 46.6983
    Number of Reflections(R-Free) 197
    Number of Reflections(R-Work) 3602
    R-Factor(R-Work) 0.2717
    R-Factor(R-Free) 0.2864
    Percent Reflections(Observed) 100.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_plane_restr 0.003
    f_chiral_restr 0.047
    f_dihedral_angle_d 10.933
    f_angle_d 0.601
    f_bond_d 0.003
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 10252
    Nucleic Acid Atoms 0
    Heterogen Atoms 0
    Solvent Atoms 0
     
     
  •   Software and Computing Hide
    Computing
    Data Collection HKL-2000
    Data Reduction (intensity integration) HKL
    Data Reduction (data scaling) HKL-2000
    Structure Solution PHASES
    Structure Refinement PHENIX (phenix.refine: 1.7.2_869)
     
    Software
    data extraction pdb_extract version: 3.10
    refinement phenix