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X-RAY DIFFRACTION
Materials and Methods page
3TH5
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 7.5
    Temperature 294.0
    Details 22% PEG4000, 7% isopropanol, 0.1M HEPES, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 294K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 40.92 α = 90
    b = 97.85 β = 96.59
    c = 51.73 γ = 90
     
    Space Group
    Space Group Name:    P 1 21 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type ADSC QUANTUM 315
    Collection Date 2011-08-12
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type APS BEAMLINE 24-ID-E
    Wavelength List 0.97921
    Site APS
    Beamline 24-ID-E
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 0.0
    Observed Criterion Sigma(I) 0.0
    Resolution(High) 2.3
    Resolution(Low) 30
    Number Reflections(All) 18366
    Number Reflections(Observed) 18169
    Percent Possible(Observed) 99.0
    B(Isotropic) From Wilson Plot 48.5
    Redundancy 3.5
     
    High Resolution Shell Details
    Resolution(High) 2.3
    Resolution(Low) 2.38
    Percent Possible(All) 99.3
    Mean I Over Sigma(Observed) 3.9
    R-Sym I(Observed) 0.295
    Redundancy 3.4
    Number Unique Reflections(All) 1804
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.3
    Resolution(Low) 20.0
    Number of Reflections(all) 17830
    Number of Reflections(Observed) 17830
    Number of Reflections(R-Free) 910
    Percent Reflections(Observed) 98.97
    R-Factor(Observed) 0.2309
    R-Work 0.22912
    R-Free 0.26398
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 60.515
    Anisotropic B[1][1] 1.48
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.04
    Anisotropic B[2][2] -2.34
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 0.87
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.3
    Shell Resolution(Low) 2.359
    Number of Reflections(R-Free) 63
    Number of Reflections(R-Work) 1259
    R-Factor(R-Work) 0.333
    R-Factor(R-Free) 0.421
    Percent Reflections(Observed) 99.1
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_scangle_it 0.827
    r_scbond_it 0.5
    r_mcangle_it 0.385
    r_mcbond_it 0.204
    r_gen_planes_refined 0.005
    r_chiral_restr 0.069
    r_dihedral_angle_4_deg 14.567
    r_dihedral_angle_3_deg 14.714
    r_dihedral_angle_2_deg 39.487
    r_dihedral_angle_1_deg 5.041
    r_angle_refined_deg 1.106
    r_bond_refined_d 0.007
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 2710
    Nucleic Acid Atoms 0
    Heterogen Atoms 66
    Solvent Atoms 23
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) HKL-2000
    Data Reduction (data scaling) HKL-2000
    Structure Solution PHASER
    Structure Refinement REFMAC 5.5.0109
     
    Software
    refinement REFMAC version: 5.5.0109
    model building PHASER