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X-RAY DIFFRACTION
Materials and Methods page
3TGS
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 6.5
    Temperature 293.0
    Details 16% PEG 1500, 0.1M CaCl2, 0.1M imidazole, VAPOR DIFFUSION, HANGING DROP, temperature 293K, pH 6.5
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 66.96 α = 90
    b = 126 β = 90
    c = 191.48 γ = 90
     
    Space Group
    Space Group Name:    C 2 2 21
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type MAR scanner 300 mm plate
    Collection Date 2009-08-07
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type APS BEAMLINE 22-ID
    Wavelength List 1
    Site APS
    Beamline 22-ID
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 0.0
    Observed Criterion Sigma(I) 0.0
    Resolution(High) 2.7
    Resolution(Low) 50
    Number Reflections(All) 23729
    Number Reflections(Observed) 17560
    Percent Possible(Observed) 74.0
    R Merge I(Observed) 0.116
    Redundancy 5.2
     
    High Resolution Shell Details
    Resolution(High) 2.7
    Resolution(Low) 2.8
    Percent Possible(All) 26.3
    R Merge I(Observed) 0.222
    R-Sym I(Observed) 0.217
    Redundancy 3.6
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.7
    Resolution(Low) 44.837
    Cut-off Sigma(F) 0.0
    Number of Reflections(all) 23335
    Number of Reflections(Observed) 17156
    Number of Reflections(R-Free) 861
    Percent Reflections(Observed) 73.52
    R-Factor(Observed) 0.2422
    R-Work 0.2394
    R-Free 0.2954
     
    Temperature Factor Modeling
    Anisotropic B[1][1] -18.1429
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] -15.72
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -16.822
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.6746
    Shell Resolution(Low) 2.8422
    Number of Reflections(R-Free) 43
    Number of Reflections(R-Work) 770
    R-Factor(R-Work) 0.369
    R-Factor(R-Free) 0.4612
    Percent Reflections(Observed) 21.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.8422
    Shell Resolution(Low) 3.0616
    Number of Reflections(R-Free) 95
    Number of Reflections(R-Work) 1712
    R-Factor(R-Work) 0.3271
    R-Factor(R-Free) 0.3915
    Percent Reflections(Observed) 47.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.0616
    Shell Resolution(Low) 3.3696
    Number of Reflections(R-Free) 134
    Number of Reflections(R-Work) 2764
    R-Factor(R-Work) 0.2725
    R-Factor(R-Free) 0.4142
    Percent Reflections(Observed) 75.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.3696
    Shell Resolution(Low) 3.857
    Number of Reflections(R-Free) 190
    Number of Reflections(R-Work) 3538
    R-Factor(R-Work) 0.2199
    R-Factor(R-Free) 0.2626
    Percent Reflections(Observed) 97.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.857
    Shell Resolution(Low) 4.8584
    Number of Reflections(R-Free) 210
    Number of Reflections(R-Work) 3684
    R-Factor(R-Work) 0.2022
    R-Factor(R-Free) 0.2474
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.8584
    Shell Resolution(Low) 44.8434
    Number of Reflections(R-Free) 189
    Number of Reflections(R-Work) 3827
    R-Factor(R-Work) 0.2414
    R-Factor(R-Free) 0.2778
    Percent Reflections(Observed) 99.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_plane_restr 0.003
    f_chiral_restr 0.044
    f_dihedral_angle_d 16.654
    f_angle_d 0.699
    f_bond_d 0.01
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 5410
    Nucleic Acid Atoms 0
    Heterogen Atoms 228
    Solvent Atoms 104
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) HKL
    Structure Refinement PHENIX (phenix.refine: 1.6.4_486)
     
    Software
    data extraction pdb_extract version: 3.10
    refinement phenix