POP-OUT | CLOSE
 
X-RAY DIFFRACTION
Materials and Methods page
3TGR
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 6.5
    Temperature 293.0
    Details 16 % PEG 1500, 0.1M CaCl2, 0.1M imidazole, VAPOR DIFFUSION, HANGING DROP, temperature 293K, pH 6.5
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 67.86 α = 90
    b = 127.51 β = 90
    c = 193.04 γ = 90
     
    Space Group
    Space Group Name:    C 2 2 21
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type MARMOSAIC 300 mm CCD
    Collection Date 2009-06-04
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type APS BEAMLINE 22-ID
    Wavelength List 1
    Site APS
    Beamline 22-ID
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 0.0
    Resolution(High) 2.8
    Resolution(Low) 50
    Number Reflections(All) 21323
    Number Reflections(Observed) 20001
    Percent Possible(Observed) 93.8
    R Merge I(Observed) 0.079
    Redundancy 4.2
     
    High Resolution Shell Details
    Resolution(High) 2.8
    Resolution(Low) 2.9
    Percent Possible(All) 82.4
    R Merge I(Observed) 0.294
    Redundancy 2.5
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.8
    Resolution(Low) 45.289
    Cut-off Sigma(F) 0.0
    Number of Reflections(all) 21060
    Number of Reflections(Observed) 19639
    Number of Reflections(R-Free) 936
    Percent Reflections(Observed) 93.25
    R-Factor(Observed) 0.2259
    R-Work 0.223
    R-Free 0.2819
     
    Temperature Factor Modeling
    Anisotropic B[1][1] -18.8646
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] -3.7417
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -10.6074
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.8
    Shell Resolution(Low) 2.9476
    Number of Reflections(R-Free) 110
    Number of Reflections(R-Work) 2196
    R-Factor(R-Work) 0.3266
    R-Factor(R-Free) 0.4035
    Percent Reflections(Observed) 78.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.9476
    Shell Resolution(Low) 3.1323
    Number of Reflections(R-Free) 131
    Number of Reflections(R-Work) 2580
    R-Factor(R-Work) 0.2757
    R-Factor(R-Free) 0.3346
    Percent Reflections(Observed) 92.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.1323
    Shell Resolution(Low) 3.374
    Number of Reflections(R-Free) 136
    Number of Reflections(R-Work) 2705
    R-Factor(R-Work) 0.2428
    R-Factor(R-Free) 0.3167
    Percent Reflections(Observed) 96.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.374
    Shell Resolution(Low) 3.7134
    Number of Reflections(R-Free) 128
    Number of Reflections(R-Work) 2802
    R-Factor(R-Work) 0.2154
    R-Factor(R-Free) 0.2898
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.7134
    Shell Resolution(Low) 4.2504
    Number of Reflections(R-Free) 136
    Number of Reflections(R-Work) 2835
    R-Factor(R-Work) 0.1954
    R-Factor(R-Free) 0.2478
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.2504
    Shell Resolution(Low) 5.3537
    Number of Reflections(R-Free) 149
    Number of Reflections(R-Work) 2786
    R-Factor(R-Work) 0.1783
    R-Factor(R-Free) 0.2217
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 5.3537
    Shell Resolution(Low) 45.2952
    Number of Reflections(R-Free) 146
    Number of Reflections(R-Work) 2799
    R-Factor(R-Work) 0.2318
    R-Factor(R-Free) 0.2997
    Percent Reflections(Observed) 93.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_plane_restr 0.002
    f_chiral_restr 0.04
    f_dihedral_angle_d 11.02
    f_angle_d 0.607
    f_bond_d 0.002
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 5428
    Nucleic Acid Atoms 0
    Heterogen Atoms 196
    Solvent Atoms 89
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (data scaling) HKL
    Structure Refinement PHENIX (phenix.refine: 1.6.4_486)
     
    Software
    data extraction pdb_extract version: 3.10
    refinement phenix
    data reduction HKL