POP-OUT | CLOSE
 
X-RAY DIFFRACTION
Materials and Methods page
3T0Q
  •   Crystallization Hide
    Crystallization Experiments
    pH 8.5
    Temperature 293.0
    Details 14% PEG 3350, 125 mM sodium malonate, 1 mM TCEP and 0.1 M Bis-Tris propane pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 44.87 α = 90
    b = 84.62 β = 90
    c = 101.14 γ = 90
     
    Space Group
    Space Group Name:    P 21 21 21
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type ADSC QUANTUM 210
    Collection Date 2009-05-07
     
    Diffraction Radiation
    Monochromator RH COATED SI
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type CHESS BEAMLINE A1
    Wavelength 0.9
    Site CHESS
    Beamline A1
     
     
  •   Refinement Data Hide
    Reflection Details
    Resolution(High) 2.35
    Resolution(Low) 45
    Number Reflections(Observed) 16073
    Percent Possible(Observed) 95.6
    R Merge I(Observed) 0.077
    Redundancy 3.8
     
    High Resolution Shell Details
    Resolution(High) 2.35
    Resolution(Low) 2.43
    Percent Possible(All) 97.8
    R Merge I(Observed) 0.244
    Redundancy 4.1
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.35
    Resolution(Low) 39.64
    Cut-off Sigma(F) 1.34
    Number of Reflections(Observed) 15916
    Number of Reflections(R-Free) 807
    Percent Reflections(Observed) 95.6
    R-Factor(Observed) 0.212
    R-Work 0.21
    R-Free 0.253
     
    Temperature Factor Modeling
    Mean Isotropic B Value 37.91
    Anisotropic B[1][1] 10.6732
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] -4.4121
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -6.2611
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.35
    Shell Resolution(Low) 2.4972
    Number of Reflections(R-Free) 142
    Number of Reflections(R-Work) 2508
    R-Factor(R-Work) 0.2668
    R-Factor(R-Free) 0.3314
    Percent Reflections(Observed) 97.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.4972
    Shell Resolution(Low) 2.69
    Number of Reflections(R-Free) 138
    Number of Reflections(R-Work) 2516
    R-Factor(R-Work) 0.2483
    R-Factor(R-Free) 0.3312
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.69
    Shell Resolution(Low) 2.9606
    Number of Reflections(R-Free) 153
    Number of Reflections(R-Work) 2512
    R-Factor(R-Work) 0.2361
    R-Factor(R-Free) 0.3062
    Percent Reflections(Observed) 97.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.9606
    Shell Resolution(Low) 3.3888
    Number of Reflections(R-Free) 135
    Number of Reflections(R-Work) 2525
    R-Factor(R-Work) 0.2102
    R-Factor(R-Free) 0.269
    Percent Reflections(Observed) 96.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.3888
    Shell Resolution(Low) 4.2688
    Number of Reflections(R-Free) 125
    Number of Reflections(R-Work) 2499
    R-Factor(R-Work) 0.1844
    R-Factor(R-Free) 0.2102
    Percent Reflections(Observed) 94.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.2688
    Shell Resolution(Low) 39.6449
    Number of Reflections(R-Free) 114
    Number of Reflections(R-Work) 2549
    R-Factor(R-Work) 0.1971
    R-Factor(R-Free) 0.2071
    Percent Reflections(Observed) 91.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_plane_restr 0.006
    f_chiral_restr 0.093
    f_dihedral_angle_d 16.277
    f_angle_d 1.283
    f_bond_d 0.008
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 2308
    Nucleic Acid Atoms 0
    Heterogen Atoms 32
    Solvent Atoms 96
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) HKL-2000
    Data Reduction (data scaling) HKL
    Structure Solution AUTOMR
    Structure Refinement PHENIX (PHENIX.REFINE: 1.7_650)
     
    Software
    data extraction pdb_extract version: 3.10
    refinement phenix
    data reduction HKL