X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion
pH 7.5
Temperature 293.0
Details 20% PEG4000, 10% isopropanol, hepes 7.5, VAPOR DIFFUSION, temperature 293K

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 119.68 α = 90
b = 90.05 β = 119.61
c = 95.23 γ = 90
Symmetry
Space Group C 1 2 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC QUANTUM 315 -- 2011-03-02
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON NSLS BEAMLINE X29A 0.98 NSLS X29A

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
-- 50 100.0 -- -- -- -- 43812 41698 0.0 0.0 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.244 45.822 -- 1.34 43812 41698 2114 99.03 -- 0.1958 0.1934 0.2383 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.2445 2.2967 -- 134 2353 0.266 0.3379 -- 89.0
X Ray Diffraction 2.2967 2.3541 -- 152 2557 0.2547 0.3315 -- 98.0
X Ray Diffraction 2.3541 2.4178 -- 146 2631 0.2472 0.3192 -- 99.0
X Ray Diffraction 2.4178 2.4889 -- 128 2675 0.2465 0.3388 -- 100.0
X Ray Diffraction 2.4889 2.5692 -- 132 2684 0.2231 0.2961 -- 100.0
X Ray Diffraction 2.5692 2.661 -- 126 2641 0.1942 0.2726 -- 100.0
X Ray Diffraction 2.661 2.7676 -- 172 2609 0.1981 0.2351 -- 100.0
X Ray Diffraction 2.7676 2.8935 -- 119 2720 0.1881 0.3012 -- 100.0
X Ray Diffraction 2.8935 3.046 -- 138 2627 0.1962 0.2599 -- 100.0
X Ray Diffraction 3.046 3.2368 -- 137 2690 0.1874 0.2319 -- 100.0
X Ray Diffraction 3.2368 3.4867 -- 140 2646 0.184 0.2378 -- 100.0
X Ray Diffraction 3.4867 3.8374 -- 140 2680 0.1837 0.24 -- 100.0
X Ray Diffraction 3.8374 4.3923 -- 144 2684 0.1629 0.2182 -- 100.0
X Ray Diffraction 4.3923 5.5323 -- 156 2652 0.1782 0.1816 -- 100.0
X Ray Diffraction 5.5323 45.8312 -- 150 2735 0.1955 0.2024 -- 100.0
Temperature Factor Modeling
Temperature Factor Value
Anisotropic B[1][1] 0.0714
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] -0.0661
Anisotropic B[2][2] 0.0348
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] -0.1061
RMS Deviations
Key Refinement Restraint Deviation
f_plane_restr 0.006
f_chiral_restr 0.071
f_dihedral_angle_d 14.687
f_angle_d 1.131
f_bond_d 0.008
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 5460
Nucleic Acid Atoms 0
Heterogen Atoms 140
Solvent Atoms 328

Software

Computing
Computing Package Purpose
HKL-2000 Data Collection
HKL-2000 Data Reduction (intensity integration)
HKL-2000 Data Reduction (data scaling)
AMoRE Structure Solution
PHENIX (phenix.refine: 1.7_650) Structure Refinement
Software
Software Name Purpose
PHENIX version: (phenix.refine: 1.7_650) refinement
AMoRE model building
HKL-2000 data collection