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An Information Portal to 105212 Biological Macromolecular Structures

X-RAY DIFFRACTION
Materials and Methods page
3RY8
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 6.5
    Temperature 293.0
    Details ammonium citrate (0.66 M) and isopropanol (1.65% v/v), pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 63.76 α = 90
    b = 79.81 β = 96.84
    c = 69.61 γ = 90
     
    Space Group
    Space Group Name:    P 1 21 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 293
     
    Diffraction Detector
    Detector CCD
    Type MAR225 CCD
    Collection Date 2010-09-10
     
    Diffraction Radiation
    Monochromator SI 111. ROSENBAUM-ROCK DOUBLE-CRYSTAL MONOCHROMATOR
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type APS BEAMLINE 22-BM
    Wavelength List 1
    Site APS
    Beamline 22-BM
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 1.0
    Observed Criterion Sigma(I) 1.0
    Resolution(High) 1.4
    Resolution(Low) 50
    Number Reflections(All) 136131
    Number Reflections(Observed) 136131
    Percent Possible(Observed) 99.9
     
    High Resolution Shell Details
    Resolution(High) 1.4
    Resolution(Low) 1.45
    Percent Possible(All) 99.6
    R Merge I(Observed) 0.342
    Mean I Over Sigma(Observed) 3.15
    Redundancy 3.2
    Number Unique Reflections(All) 13552
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 1.4
    Resolution(Low) 31.975
    Cut-off Sigma(F) 0.0
    Number of Reflections(all) 131576
    Number of Reflections(Observed) 131576
    Number of Reflections(R-Free) 6674
    Percent Reflections(Observed) 96.56
    R-Factor(All) 0.1394
    R-Factor(Observed) 0.1394
    R-Work 0.1388
    R-Free 0.1506
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Data Not Available
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_bond_d 0.011
    f_angle_d 1.393
    f_dihedral_angle_d 12.433
    f_chiral_restr 0.088
    f_bond_df_plane_restr 0.009
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 4722
    Nucleic Acid Atoms 0
    Heterogen Atoms 57
    Solvent Atoms 808
     
     
  •   Software and Computing Hide
    Computing
    Data Collection SerGUI
    Data Reduction (intensity integration) HKL-2000
    Data Reduction (data scaling) HKL-2000
    Structure Solution PHASER
    Structure Refinement PHENIX (phenix.refine: 1.6.4_486)
     
    Software
    refinement PHENIX version: (phenix.refine: 1.6.4_486)
    model building PHASER
    data collection SerGUI