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X-RAY DIFFRACTION
Materials and Methods page
3RUL
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    Temperature 291.0
    Details 24% PEG3350, 0.2M ammonium tartrate, 0.015M CYMAL-7, VAPOR DIFFUSION, HANGING DROP, temperature 291K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 53.3 α = 90
    b = 86.25 β = 90
    c = 107.19 γ = 90
     
    Space Group
    Space Group Name:    P 21 21 21
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 93
     
    Diffraction Detector
    Collection Date 2010-03-02
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type NSLS BEAMLINE X6A
    Wavelength List 0.9537
    Site NSLS
    Beamline X6A
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 0.0
    Observed Criterion Sigma(I) 0.0
    Resolution(High) 2.5
    Resolution(Low) 19.6
    Number Reflections(All) 17703
    Number Reflections(Observed) 16489
    Percent Possible(Observed) 93.14
    B(Isotropic) From Wilson Plot 50.76
    Redundancy 16.0
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.5
    Resolution(Low) 19.603
    Cut-off Sigma(F) 1.99
    Number of Reflections(Observed) 17635
    Number of Reflections(R-Free) 907
    Percent Reflections(Observed) 99.88
    R-Factor(Observed) 0.2445
    R-Work 0.2428
    R-Free 0.2774
     
    Temperature Factor Modeling
    Anisotropic B[1][1] -21.8954
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] 40.7618
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -18.8663
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.5
    Shell Resolution(Low) 2.6563
    Number of Reflections(R-Free) 158
    Number of Reflections(R-Work) 2710
    R-Factor(R-Work) 0.3207
    R-Factor(R-Free) 0.3771
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.6563
    Shell Resolution(Low) 2.8608
    Number of Reflections(R-Free) 159
    Number of Reflections(R-Work) 2736
    R-Factor(R-Work) 0.3195
    R-Factor(R-Free) 0.3448
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.8608
    Shell Resolution(Low) 3.1476
    Number of Reflections(R-Free) 172
    Number of Reflections(R-Work) 2747
    R-Factor(R-Work) 0.2926
    R-Factor(R-Free) 0.3597
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.1476
    Shell Resolution(Low) 3.6007
    Number of Reflections(R-Free) 150
    Number of Reflections(R-Work) 2762
    R-Factor(R-Work) 0.2791
    R-Factor(R-Free) 0.2683
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.6007
    Shell Resolution(Low) 4.5272
    Number of Reflections(R-Free) 134
    Number of Reflections(R-Work) 2817
    R-Factor(R-Work) 0.22
    R-Factor(R-Free) 0.2742
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.5272
    Shell Resolution(Low) 19.6032
    Number of Reflections(R-Free) 134
    Number of Reflections(R-Work) 2956
    R-Factor(R-Work) 0.2022
    R-Factor(R-Free) 0.2181
    Percent Reflections(Observed) 100.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_plane_restr 0.008
    f_chiral_restr 0.083
    f_dihedral_angle_d 13.91
    f_angle_d 1.285
    f_bond_d 0.008
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 2856
    Nucleic Acid Atoms 0
    Heterogen Atoms 189
    Solvent Atoms 15
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) XDS
    Data Reduction (data scaling) XSCALE
    Structure Solution MOLREP
    Structure Refinement PHENIX (phenix.refine: 1.6.2_432)
     
    Software
    data extraction pdb_extract version: 3.10
    refinement phenix
    molecular replacement MOLREP
    data processing Xscale