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X-RAY DIFFRACTION
Materials and Methods page
3RSR
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 6.5
    Temperature 298.0
    Details 10 mg/mL protein, 0.1 M sodium acetate at pH 6.5, 25% PEG 3350, 0.2 M ammonium sulfate , VAPOR DIFFUSION, HANGING DROP, temperature 298K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 108.35 α = 90
    b = 118.21 β = 90
    c = 63.92 γ = 90
     
    Space Group
    Space Group Name:    P 21 21 2
     
     
  •   Diffraction Hide
    Diffraction Detector
    Detector CCD
    Type MARMOSAIC 300 mm CCD
    Collection Date 2010-04-25
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type APS BEAMLINE 23-BM-B
    Wavelength List 1.0
    Site APS
    Beamline 23-BM-B
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 3.5
    Observed Criterion Sigma(I) 3.5
    Resolution(High) 2.3
    Resolution(Low) 20
    Number Reflections(All) 37126
    Number Reflections(Observed) 37089
    Percent Possible(Observed) 99.9
     
    High Resolution Shell Details
    Resolution(High) 2.3
    Percent Possible(All) 99.0
    R-Sym I(Observed) 0.496
    Redundancy 5.7
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.3
    Resolution(Low) 19.969
    Cut-off Sigma(F) 1.34
    Number of Reflections(all) 36133
    Number of Reflections(Observed) 37089
    Number of Reflections(R-Free) 1860
    Percent Reflections(Observed) 99.96
    R-Factor(All) 0.1904
    R-Factor(Observed) 0.1882
    R-Work 0.1882
    R-Free 0.2325
    R-Free Selection Details RANDOm
     
    Temperature Factor Modeling
    Anisotropic B[1][1] -2.5061
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] -12.0005
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 14.5066
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.3001
    Shell Resolution(Low) 2.3622
    Number of Reflections(R-Free) 156
    Number of Reflections(R-Work) 2661
    R-Factor(R-Work) 0.2119
    R-Factor(R-Free) 0.2793
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.3622
    Shell Resolution(Low) 2.4316
    Number of Reflections(R-Free) 135
    Number of Reflections(R-Work) 2660
    R-Factor(R-Work) 0.2082
    R-Factor(R-Free) 0.2754
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.4316
    Shell Resolution(Low) 2.51
    Number of Reflections(R-Free) 150
    Number of Reflections(R-Work) 2647
    R-Factor(R-Work) 0.2107
    R-Factor(R-Free) 0.3045
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.51
    Shell Resolution(Low) 2.5995
    Number of Reflections(R-Free) 157
    Number of Reflections(R-Work) 2676
    R-Factor(R-Work) 0.2004
    R-Factor(R-Free) 0.2549
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.5995
    Shell Resolution(Low) 2.7033
    Number of Reflections(R-Free) 152
    Number of Reflections(R-Work) 2667
    R-Factor(R-Work) 0.1974
    R-Factor(R-Free) 0.2508
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.7033
    Shell Resolution(Low) 2.826
    Number of Reflections(R-Free) 138
    Number of Reflections(R-Work) 2690
    R-Factor(R-Work) 0.1925
    R-Factor(R-Free) 0.2302
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.826
    Shell Resolution(Low) 2.9746
    Number of Reflections(R-Free) 128
    Number of Reflections(R-Work) 2716
    R-Factor(R-Work) 0.203
    R-Factor(R-Free) 0.2739
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.9746
    Shell Resolution(Low) 3.1603
    Number of Reflections(R-Free) 148
    Number of Reflections(R-Work) 2689
    R-Factor(R-Work) 0.2013
    R-Factor(R-Free) 0.277
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.1603
    Shell Resolution(Low) 3.4032
    Number of Reflections(R-Free) 109
    Number of Reflections(R-Work) 2758
    R-Factor(R-Work) 0.1922
    R-Factor(R-Free) 0.2505
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.4032
    Shell Resolution(Low) 3.7436
    Number of Reflections(R-Free) 148
    Number of Reflections(R-Work) 2714
    R-Factor(R-Work) 0.1765
    R-Factor(R-Free) 0.2068
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.7436
    Shell Resolution(Low) 4.2807
    Number of Reflections(R-Free) 132
    Number of Reflections(R-Work) 2743
    R-Factor(R-Work) 0.1684
    R-Factor(R-Free) 0.2047
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.2807
    Shell Resolution(Low) 5.3757
    Number of Reflections(R-Free) 159
    Number of Reflections(R-Work) 2774
    R-Factor(R-Work) 0.1647
    R-Factor(R-Free) 0.2045
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 5.3757
    Shell Resolution(Low) 19.9693
    Number of Reflections(R-Free) 148
    Number of Reflections(R-Work) 2878
    R-Factor(R-Work) 0.2034
    R-Factor(R-Free) 0.2242
    Percent Reflections(Observed) 100.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_plane_restr 0.006
    f_chiral_restr 0.093
    f_dihedral_angle_d 16.676
    f_angle_d 1.303
    f_bond_d 0.008
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 4794
    Nucleic Acid Atoms 0
    Heterogen Atoms 33
    Solvent Atoms 243
     
     
  •   Software and Computing Hide
    Computing
    Data Collection HKL-2000
    Data Reduction (intensity integration) HKL-2000
    Data Reduction (data scaling) HKL-2000
    Structure Solution phaser
    Structure Refinement PHENIX (phenix.refine: 1.7_650)
     
    Software
    refinement PHENIX version: (phenix.refine: 1.7_650)
    model building phaser
    data collection HKL-2000