POP-OUT | CLOSE

An Information Portal to 105097 Biological Macromolecular Structures

X-RAY DIFFRACTION
Materials and Methods page
3RSN
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 8.5
    Temperature 277.0
    Details 100 mM Tris-HCl pH8.5, 20% PEG8000, VAPOR DIFFUSION, HANGING DROP, temperature 277K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 49.98 α = 90
    b = 49.98 β = 90
    c = 165.52 γ = 120
     
    Space Group
    Space Group Name:    P 31 2 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type MAR 300 CCD
    Collection Date 2008-11-07
     
    Diffraction Radiation
    Monochromator C(111)
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type APS BEAMLINE 21-ID-G
    Wavelength List 0.97856
    Site APS
    Beamline 21-ID-G
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 0.0
    Observed Criterion Sigma(I) 0.0
    Resolution(High) 2.1
    Resolution(Low) 100
    Number Reflections(All) 14841
    Number Reflections(Observed) 14752
    Percent Possible(Observed) 99.4
    R Merge I(Observed) 0.074
    Redundancy 19.0
     
    High Resolution Shell Details
    Resolution(High) 2.1
    Resolution(Low) 2.18
    Percent Possible(All) 97.9
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method SAD
    reflnsShellList 2.1
    Resolution(Low) 34.057
    Cut-off Sigma(F) 1.11
    Number of Reflections(Observed) 14752
    Number of Reflections(R-Free) 2554
    Percent Reflections(Observed) 99.37
    R-Factor(Observed) 0.2171
    R-Work 0.2133
    R-Free 0.2539
    R-Free Selection Details random
     
    Temperature Factor Modeling
    Anisotropic B[1][1] 2.5771
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] 2.5771
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -5.1542
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.1
    Shell Resolution(Low) 2.175
    Number of Reflections(R-Free) 249
    Number of Reflections(R-Work) 2367
    R-Factor(R-Work) 0.3228
    R-Factor(R-Free) 0.4175
    Percent Reflections(Observed) 96.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.175
    Shell Resolution(Low) 2.2621
    Number of Reflections(R-Free) 282
    Number of Reflections(R-Work) 2401
    R-Factor(R-Work) 0.2732
    R-Factor(R-Free) 0.3249
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.2621
    Shell Resolution(Low) 2.365
    Number of Reflections(R-Free) 260
    Number of Reflections(R-Work) 2425
    R-Factor(R-Work) 0.2587
    R-Factor(R-Free) 0.317
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.365
    Shell Resolution(Low) 2.4897
    Number of Reflections(R-Free) 245
    Number of Reflections(R-Work) 2456
    R-Factor(R-Work) 0.2668
    R-Factor(R-Free) 0.3308
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.4897
    Shell Resolution(Low) 2.6456
    Number of Reflections(R-Free) 284
    Number of Reflections(R-Work) 2416
    R-Factor(R-Work) 0.2611
    R-Factor(R-Free) 0.3241
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.6456
    Shell Resolution(Low) 2.8498
    Number of Reflections(R-Free) 259
    Number of Reflections(R-Work) 2403
    R-Factor(R-Work) 0.2528
    R-Factor(R-Free) 0.2857
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.8498
    Shell Resolution(Low) 3.1364
    Number of Reflections(R-Free) 272
    Number of Reflections(R-Work) 2464
    R-Factor(R-Work) 0.2337
    R-Factor(R-Free) 0.2958
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.1364
    Shell Resolution(Low) 3.5898
    Number of Reflections(R-Free) 235
    Number of Reflections(R-Work) 2487
    R-Factor(R-Work) 0.2051
    R-Factor(R-Free) 0.2503
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.5898
    Shell Resolution(Low) 4.5211
    Number of Reflections(R-Free) 257
    Number of Reflections(R-Work) 2403
    R-Factor(R-Work) 0.1788
    R-Factor(R-Free) 0.2042
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.5211
    Shell Resolution(Low) 34.061
    Number of Reflections(R-Free) 211
    Number of Reflections(R-Work) 2446
    R-Factor(R-Work) 0.1826
    R-Factor(R-Free) 0.2032
    Percent Reflections(Observed) 99.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_plane_restr 0.005
    f_chiral_restr 0.084
    f_dihedral_angle_d 14.599
    f_angle_d 1.117
    f_bond_d 0.011
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 1336
    Nucleic Acid Atoms 0
    Heterogen Atoms 1
    Solvent Atoms 75
     
     
  •   Software and Computing Hide
    Computing
    Data Collection MD-2 diffractometer software
    Data Reduction (intensity integration) HKL-2000
    Data Reduction (data scaling) HKL-2000
    Structure Solution SHARP
    Structure Refinement PHENIX (phenix.refine: 1.6.4_486)
     
    Software
    refinement PHENIX version: (phenix.refine: 1.6.4_486)
    model building SHARP
    data collection MD-2 version: diffractometer software