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139555
Biological Macromolecular Structures Enabling Breakthroughs in Research and Education
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Structure Summary
3D View
Annotations
Sequence
Sequence Similarity
Structure Similarity
Experiment
3RSI
The structure of a putative enoyl-CoA hydratase/isomerase from Mycobacterium abscessus ATCC 19977 / DSM 44196
Display Files
FASTA Sequence
PDB File
PDB File (Header)
mmCIF File
mmCIF File (Header)
PDBML/XML File
PDBML/XML File (Header)
Download Files
FASTA Sequence
PDB File (Text)
PDB File (gz)
PDBx/mmCIF File
PDBx/mmCIF File (gz)
PDBML/XML File
PDBML/XML File (gz)
Structure Factor (Text)
Structure Factor (gz)
Biological Assembly (gz) (A+S)
X-RAY DIFFRACTION Experimental Data & Validation
X-ray Experimental Help
Crystallization
Crystalization Experiments
Method
Vapor Diffusion Sitting Drop
pH
9.5
Temperature
289.0
Details
20% PEG8000, 0.1M CHES pH9.5. Cryo protected with 25% ethylene glycol, VAPOR DIFFUSION, SITTING DROP, temperature 289K
Crystal Data
Unit Cell
Length (Å)
Angle (°)
a = 47.85
α = 90
b = 121.67
β = 96.65
c = 64.55
γ = 90
Symmetry
Space Group
P 1 21 1
Diffraction
Diffraction Experiment
ID #
Data Collection Temperature
1
100
Diffraction Detector
Detector
Diffraction Type
Details
Collection Date
CCD
RIGAKU SATURN 944+
--
2011-01-23
Diffraction Radiation
Monochromator
Protocol
Varimax
SINGLE WAVELENGTH
Diffraction Detector Source
Source
Type
Wavelength List
Synchrotron Site
Beamline
ROTATING ANODE
RIGAKU FR-E SUPERBRIGHT
1.5418
--
--
Data Collection
Overall
Resolution (High)
Resolution (Low)
Percent Possible (Observed)
R Merge I (Observed)
R Sym I (Observed)
Net I Over Average Sigma (I)
Redundancy
Number Reflections (All)
Number Reflections (Observed)
Observed Criterion Sigma (F)
Observed Criterion Sigma (I)
B (Isotropic) From Wilson Plot
2
64.12
96.9
0.063
--
--
--
--
47423
--
-3.0
18.605
High Resolution Shell
Resolution (High)
Resolution (Low)
Percent Possible (All)
R Merge I (Observed)
R-Sym I (Observed)
Mean I Over Sigma (Observed)
Redundancy
Number Unique Reflections (All)
2.0
2.05
76.0
0.174
--
5.92
--
--
Refinement
Statistics
Structure Solution Method
Refinement High Resolution
Refinement Low Resolution
Cut-off Sigma (I)
Cut-off Sigma (F)
Number of Reflections (All)
Number of Reflections (Observed)
Number of Reflections (R-Free)
Percent Reflections (Observed)
R-Factor (All)
R-Factor (Observed)
R-Work
R-Free
R-Free Selection Details
MOLECULAR REPLACEMENT
2.0
19.97
--
0.0
--
46990
2371
95.05
--
0.1521
0.1497
0.1954
RANDOM
High Resolution Shell
Refinement method
Shell Resolution (High)
Shell Resolution (Low)
# of Reflections (Observed)
# of Reflections (R-Free)
# of Reflections (R-Work)
R-Factor (R-Work)
R-Factor (R-Free)
R-Factor (R-Free Error)
Percent Reflections (Observed)
X Ray Diffraction
2.0
2.052
--
156
3073
0.143
0.207
--
89.77
Temperature Factor Modeling
Temperature Factor
Value
Mean Isotropic B
17.9431
Anisotropic B[1][1]
-0.63
Anisotropic B[1][2]
0.0
Anisotropic B[1][3]
-0.03
Anisotropic B[2][2]
1.36
Anisotropic B[2][3]
0.0
Anisotropic B[3][3]
-0.74
RMS Deviations
Key
Refinement Restraint Deviation
r_scbond_it
1.876
r_mcbond_other
0.15
r_gen_planes_refined
0.005
r_gen_planes_other
0.001
r_angle_refined_deg
1.276
r_bond_refined_d
0.012
r_bond_other_d
0.001
r_scangle_it
3.176
r_angle_other_deg
0.904
r_chiral_restr
0.078
r_dihedral_angle_1_deg
6.597
r_mcangle_it
1.099
r_dihedral_angle_4_deg
20.079
r_dihedral_angle_3_deg
12.201
r_dihedral_angle_2_deg
31.838
r_mcbond_it
0.604
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms
Numbers
Protein Atoms
5377
Nucleic Acid Atoms
0
Heterogen Atoms
31
Solvent Atoms
521
Software
Software
Software Name
Purpose
XSCALE
data scaling
PHASER
phasing version: 2.1.4
REFMAC
refinement
PDB_EXTRACT
data extraction version: 3.10