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An Information Portal to 105339 Biological Macromolecular Structures

X-RAY DIFFRACTION
Materials and Methods page
3RMN
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 7.5
    Temperature 277.15
    Details 15% PEG 8000, 20mM sodium phosphate, 175mM sodium chloride, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 277.15K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 69.9 α = 90
    b = 71.1 β = 100.6
    c = 72.9 γ = 90
     
    Space Group
    Space Group Name:    C 1 2 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type RAYONIX MX-225
    Details Collimating mirror
    Collection Date 2009-12-12
     
    Diffraction Radiation
    Monochromator Double Crystal Monochromator
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type BESSY BEAMLINE 14.2
    Wavelength List 0.91841
    Site BESSY
    Beamline 14.2
     
     
  •   Refinement Data Hide
    Reflection Details
    Resolution(High) 1.78
    Resolution(Low) 50
    Number Reflections(All) 32972
    Number Reflections(Observed) 32972
    Percent Possible(Observed) 97.9
    B(Isotropic) From Wilson Plot 13.54
    Redundancy 3.0
     
    High Resolution Shell Details
    Resolution(High) 1.78
    Resolution(Low) 1.81
    Percent Possible(All) 99.4
    Mean I Over Sigma(Observed) 2.1
    R-Sym I(Observed) 0.476
    Redundancy 2.9
    Number Unique Reflections(All) 1610
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 1.78
    Resolution(Low) 34.354
    Cut-off Sigma(F) 0.0
    Number of Reflections(all) 32760
    Number of Reflections(Observed) 31209
    Number of Reflections(R-Free) 1551
    Percent Reflections(Observed) 92.76
    R-Factor(All) 0.1559
    R-Factor(Observed) 0.1559
    R-Work 0.1544
    R-Free 0.1852
    R-Free Selection Details Random
     
    Temperature Factor Modeling
    Mean Isotropic B Value 22.3951
    Anisotropic B[1][1] 3.9133
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] -4.2516
    Anisotropic B[2][2] -2.1641
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -1.7492
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.78
    Shell Resolution(Low) 1.8436
    Number of Reflections(R-Free) 150
    Number of Reflections(R-Work) 2692
    R-Factor(R-Work) 0.2066
    R-Factor(R-Free) 0.2814
    Percent Reflections(Observed) 85.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.8436
    Shell Resolution(Low) 1.9174
    Number of Reflections(R-Free) 156
    Number of Reflections(R-Work) 2764
    R-Factor(R-Work) 0.1854
    R-Factor(R-Free) 0.2398
    Percent Reflections(Observed) 87.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.9174
    Shell Resolution(Low) 2.0047
    Number of Reflections(R-Free) 151
    Number of Reflections(R-Work) 2898
    R-Factor(R-Work) 0.1595
    R-Factor(R-Free) 0.2017
    Percent Reflections(Observed) 91.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.0047
    Shell Resolution(Low) 2.1104
    Number of Reflections(R-Free) 154
    Number of Reflections(R-Work) 3001
    R-Factor(R-Work) 0.1508
    R-Factor(R-Free) 0.2078
    Percent Reflections(Observed) 94.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.1104
    Shell Resolution(Low) 2.2426
    Number of Reflections(R-Free) 155
    Number of Reflections(R-Work) 3013
    R-Factor(R-Work) 0.1386
    R-Factor(R-Free) 0.1561
    Percent Reflections(Observed) 94.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.2426
    Shell Resolution(Low) 2.4157
    Number of Reflections(R-Free) 167
    Number of Reflections(R-Work) 3020
    R-Factor(R-Work) 0.1386
    R-Factor(R-Free) 0.1768
    Percent Reflections(Observed) 95.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.4157
    Shell Resolution(Low) 2.6587
    Number of Reflections(R-Free) 140
    Number of Reflections(R-Work) 3054
    R-Factor(R-Work) 0.1595
    R-Factor(R-Free) 0.1769
    Percent Reflections(Observed) 95.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.6587
    Shell Resolution(Low) 3.0432
    Number of Reflections(R-Free) 155
    Number of Reflections(R-Work) 3064
    R-Factor(R-Work) 0.1659
    R-Factor(R-Free) 0.2368
    Percent Reflections(Observed) 95.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.0432
    Shell Resolution(Low) 3.8333
    Number of Reflections(R-Free) 168
    Number of Reflections(R-Work) 3091
    R-Factor(R-Work) 0.1449
    R-Factor(R-Free) 0.1694
    Percent Reflections(Observed) 96.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.8333
    Shell Resolution(Low) 34.36
    Number of Reflections(R-Free) 155
    Number of Reflections(R-Work) 3061
    R-Factor(R-Work) 0.149
    R-Factor(R-Free) 0.1488
    Percent Reflections(Observed) 94.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_dihedral_angle_d 17.28
    f_plane_restr 0.005
    f_chiral_restr 0.074
    f_angle_d 1.055
    f_bond_d 0.008
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 2341
    Nucleic Acid Atoms 0
    Heterogen Atoms 68
    Solvent Atoms 314
     
     
  •   Software and Computing Hide
    Computing
    Data Collection MAR345dtb
    Data Reduction (intensity integration) HKL-2000
    Data Reduction (data scaling) HKL-2000
    Structure Solution PHASER
    Structure Refinement PHENIX (phenix.refine: 1.6.4_486)
     
    Software
    refinement PHENIX version: (phenix.refine: 1.6.4_486)
    model building PHASER
    data collection MAR345dtb